PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00079935001 | ||||||||
Common Name | GSBRNA2T00079935001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 128aa MW: 14303.6 Da PI: 7.8092 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 75.2 | 1.2e-23 | 12 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C +++ C+++C +a yfp+e + +++++ klFG+ n+++++k +p+e+++ ++ss++ e+ a+++d + G +gvi+kl+ +++ + GSBRNA2T00079935001 12 RCCVCIEKNKICTRKCEFAAYFPNEMQGDYEAATKLFGTPNITRMMKLAPHEQKHLLASSILKEGVAWTDDNIGGGCGVIQKLRGEIKLH 101 6***************************************************************************************** PP DUF260 91 kaelallkee 100 + l+ ++++ GSBRNA2T00079935001 102 EDYLSDIRKK 111 *999988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.805 | 11 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-19 | 12 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MEAVGTDTKH GRCCVCIEKN KICTRKCEFA AYFPNEMQGD YEAATKLFGT PNITRMMKLA 60 PHEQKHLLAS SILKEGVAWT DDNIGGGCGV IQKLRGEIKL HEDYLSDIRK KISEEKKELV 120 LLSNPYI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00079935001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022564984.1 | 6e-72 | LOB domain-containing protein 5-like | ||||
Swissprot | Q9C8V8 | 2e-35 | LBD5_ARATH; LOB domain-containing protein 5 | ||||
TrEMBL | A0A078I572 | 4e-90 | A0A078I572_BRANA; BnaA07g07870D protein | ||||
STRING | Bo9g027690.1 | 9e-39 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12282 | 14 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G36000.1 | 8e-38 | LOB domain-containing protein 5 |
Publications ? help Back to Top | |||
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