PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00078899001
Common NameGSBRNA2T00078899001, LOC106359049
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 155aa    MW: 17032 Da    PI: 7.9445
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00078899001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.64.2e-1581126150
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 
                          ++++GVr ++ +g+W AeI+dps    r r +lg+f tae+Aa a++ a+
  GSBRNA2T00078899001  81 KKHRGVRKRP-SGKWSAEIWDPSA---RERRWLGTFPTAEMAAGAYDDAA 126
                          589*******.7*********954...4999****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.78E-1781117No hitNo description
SMARTSM003806.7E-2282145IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-1582133IPR016177DNA-binding domain
PfamPF008474.6E-882126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2082134IPR001471AP2/ERF domain
PROSITE profilePS5103219.28282143IPR001471AP2/ERF domain
PRINTSPR003673.1E-78394IPR001471AP2/ERF domain
PRINTSPR003673.1E-7105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MDYSEIDPSY DQKPPYLTRD QEHVIMVSAL RQVISNAGSD TASLSTFEAL QPLDAGPCSL  60
CGITGCYGCA FPQHREINKE KKHRGVRKRP SGKWSAEIWD PSARERRWLG TFPTAEMAAG  120
AYDDAAAGFV RRKASRGGTR NGKEAYTKTT VEDD*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00078899001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895871e-155AC189587.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH012K23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109960.11e-113PREDICTED: ethylene-responsive transcription factor ERF120-like
RefseqXP_013654263.11e-113ethylene-responsive transcription factor ERF120
SwissprotQ9SK671e-64EF120_ARATH; Ethylene-responsive transcription factor ERF120
TrEMBLA0A078FMG01e-112A0A078FMG0_BRANA; BnaA08g14320D protein
TrEMBLA0A3P6BUM11e-112A0A3P6BUM1_BRACM; Uncharacterized protein
TrEMBLM4D1S91e-112M4D1S9_BRARP; Uncharacterized protein
STRINGBra010429.1-P1e-112(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20350.12e-66ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]