PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00078330001 | ||||||||
Common Name | GSBRNA2T00078330001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 368aa MW: 42198.2 Da PI: 4.7929 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.3 | 2.1e-06 | 90 | 113 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC ff + G+C+ G +CkF+H+ GSBRNA2T00078330001 90 KSILCEFFKA-GQCQKGFKCKFSHD 113 6679**7777.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 6.7E-5 | 88 | 114 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.89E-6 | 88 | 113 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.272 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 90 | 113 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7 | 159 | 196 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.793 | 159 | 197 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF16543 | 7.3E-16 | 217 | 296 | IPR032378 | ZC3H15/TMA46 family, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MPPKQQPKAD LAKKQKQVED KTFGLKNKNK SKNVQKYVQS LKQSVQPKPD ASKLAAKKKK 60 EEEKAREQEL NELFKVAISQ PKVPVGVDPK SILCEFFKAG QCQKGFKCKF SHDLNIQRKG 120 EKIDIYSDKR DEDGDMEEWD QETLEKVVES KKNEYNQNKP TDIVCKYFLD AVEKKQYGWF 180 WACPNGGKEC HYRHALPPGY ILKSQMKALL EEESQKMPVE EEIENERAKL KTATQMTPAL 240 FMEWKRKKIA ERDAGLAASQ AERAKNDRMS GRELFLSNAS LFVDDAEAFE EYQREKEEEE 300 IEQKEKNKET EAGTSKSSGD AEQKEVEDEE EDDDDDLDMD ELDELEASLS KTSIQIREPN 360 NEGSSSS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.13888 | 0.0 | leaf| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00078330001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189534 | 2e-75 | AC189534.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH001J06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009117500.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 21-like | ||||
Swissprot | Q9SK74 | 0.0 | C3H21_ARATH; Zinc finger CCCH domain-containing protein 21 | ||||
TrEMBL | A0A078FHG7 | 0.0 | A0A078FHG7_BRANA; BnaA09g43820D protein | ||||
TrEMBL | A0A397Y3I7 | 0.0 | A0A397Y3I7_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EQP1 | 0.0 | M4EQP1_BRARP; Uncharacterized protein | ||||
STRING | Bra031114.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4874 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20280.1 | 0.0 | C3H family protein |
Publications ? help Back to Top | |||
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