PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00077817001
Common NameGSBRNA2T00077817001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 279aa    MW: 31063.4 Da    PI: 4.8003
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00077817001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.67.2e-18169203135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  GSBRNA2T00077817001 169 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 203
                          99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.3E-861259IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.345163199IPR000679Zinc finger, GATA-type
SMARTSM004011.4E-17163213IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-14164201IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577167.6E-16165227No hitNo description
CDDcd002022.06E-15168215No hitNo description
PfamPF003209.3E-16169203IPR000679Zinc finger, GATA-type
PROSITE patternPS003440169194IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEQQQLLTPD LLLVAGNSDS FVVDDLLDFS NDNGQPDDGF EPFPDSSTVY AGNLAVSSNS  60
SSLYTDGSAF SEDLCVPCED LAELEWLSNF VEDSFSKEDQ DKLQLLSGSL QKPQTTGSRS  120
AASTWASRLL AIAGSDEPFP KKKHHKLKEH DSSGEYEVDG GEAEVERRCL HCATDKTPQW  180
RTGPMGPKTL CNACGVRYKS GRLVPEYRPA SSPTFVMARH SNSHRKVMEL RRQKEVRDEH  240
LLSQLRCENL LMDIRSNGDD FLIRNDNNHV APDFRHLI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00077817001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895650.0AC189565.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009C15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138148.10.0PREDICTED: GATA transcription factor 9-like
RefseqXP_013719577.10.0GATA transcription factor 9-like
SwissprotO826321e-146GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A078FGC40.0A0A078FGC4_BRANA; GATA transcription factor
STRINGBra037037.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-148GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]