PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00077813001
Common NameGSBRNA2T00077813001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 224aa    MW: 24579.1 Da    PI: 4.374
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00077813001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-171868155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+A +a++ a+++++g
  GSBRNA2T00077813001 18 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAMRAHDVAALSIKG 68
                         68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.8E-121868IPR001471AP2/ERF domain
PROSITE profilePS5103222.81976IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-211976IPR016177DNA-binding domain
SMARTSM003802.3E-351982IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-311977IPR001471AP2/ERF domain
CDDcd000181.65E-322078No hitNo description
PRINTSPR003675.6E-102031IPR001471AP2/ERF domain
PRINTSPR003675.6E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MVSSSLGSDK EKKGSKQPVY RGVRMRSWGK WVSEIREPRK KSRIWLGTFP TAEMAMRAHD  60
VAALSIKGSS AILNFPELSD SLPRPASLSP RDVRAAATKA ALMDFGSTVR SESETSEETA  120
VSGQNKRSES ETSETASFSS FSVTSVDEDS TVSDDLDNIV ELPSLGTSLD ESSEFVFFDS  180
LEDLVFLPSW SLSGTVDDFT YDNDSLLNSV FQESFSWKHF PEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-191477973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00077813001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895650.0AC189565.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009C15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138144.11e-146PREDICTED: ethylene-responsive transcription factor ERF043-like
RefseqXP_013719573.11e-146ethylene-responsive transcription factor ERF043-like
SwissprotQ9M0809e-94ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLA0A078FME11e-157A0A078FME1_BRANA; BnaA03g52210D protein
STRINGBra037041.1-P1e-146(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.12e-83ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]