PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00076833001
Common NameGSBRNA2T00076833001, LOC106389726
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-PHD
Protein Properties Length: 830aa    MW: 93971.3 Da    PI: 4.4919
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00076833001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox34.14.6e-11461505953
                          HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
             Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                          +  +e L ++F +n  ps++ re+L+k+l+L+ ++V+ WF+N R+
  GSBRNA2T00076833001 461 RAAVEKLRQVFVENELPSKDVRERLSKELSLDPEKVSKWFKNARY 505
                          567899*************************************97 PP
2PHD41.53.1e-14191246151
                          SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                  PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                          +C+ C++  + ++++++lCd +C+++fH+kCl+++le+e++p g   w+C+ C++k
  GSBRNA2T00076833001 191 FCAECNSreAFQDNDIILCDgTCNRAFHQKCLDPPLETESIPPGdqGWFCKFCDCK 246
                          6999**966566********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579038.23E-14183248IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.3E-12187246IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.976189246IPR019787Zinc finger, PHD-finger
SMARTSM002498.7E-10191244IPR001965Zinc finger, PHD-type
CDDcd155043.61E-31191243No hitNo description
PfamPF006282.1E-11191246IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590192243IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.602.6E-12439504IPR009057Homeodomain-like
PROSITE profilePS5007112.843450510IPR001356Homeobox domain
SMARTSM003891.5E-11452514IPR001356Homeobox domain
SuperFamilySSF466898.98E-11452516IPR009057Homeodomain-like
CDDcd000865.97E-9453505No hitNo description
PfamPF000461.4E-8461505IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    Send to blast
MKKSVTKGRI EKETDKACVS VEKAESTLLS SLVKKGKQTS NKRKYTKRKS EEEISSKSNK  60
RKYSRCNEEE EEEKGKKTRK RKRKRQQKGN KAEEEEEVDE ALRLQRRTRY LLIKMKMQQN  120
LIDAYAAEGW KGQSREKIRP DKELERARKH ILDCKLGLRD AIHQLDLLSS VGRMEEKVMA  180
PDGSIHHDHI FCAECNSREA FQDNDIILCD GTCNRAFHQK CLDPPLETES IPPGDQGWFC  240
KFCDCKIEII DTMNAQIGTQ FSVDSNWQDI FNEEASLPNG CEATLNKEAD WPSDDSEDGD  300
YDPETKDKSS NKSDSGGGGG DNDGESVSSS SVSLASDGVA LSTGSWEGGN MVDSEETSNE  360
ETVCGPRQRK TVDYTKLYHE MFGKDAVLQE QGSEDEDWGP SDRRKRKKES DGASTLVAVC  420
ENSKKDQHVV KETPEKTQHS ERDSVSVEGK VGKRPMFRIP RAAVEKLRQV FVENELPSKD  480
VRERLSKELS LDPEKVSKWF KNARYMALRN RKTESMKQPE GSKAGSEDSG LEAVLVEKNT  540
ERNELQDTVD KTAKEKNTET NETQGIADES VMEENIGTNE IQDSVDESTK EKNTGANENH  600
DTLDQTVTEE NTVTNGIQDT LDETVMEENT EAPKFQDTLV ETFMEKNSET NEVQDTAEET  660
VDVENNSETN EIQGTMEINE IQDTIDETVP LRYDDFTNQT TVSACNDKQE ETEDANDSFP  720
TPPEDESQQY LEQKDSSFAL VPHEELTSEM SVETPLEDKE AESQLKEEEE LEALMEVLCR  780
AENKLMDVTH RLERFRTPKG RKKLSKSSSC LSEEDYVVYV PTAEIKVKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15981KRKYSRCNEEEEEEKGKKTRKRK
27583KKTRKRKRK
37883RKRKRK
47884RKRKRKR
5403407RKRKK
6403408RKRKKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00076833001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013685555.10.0pathogenesis-related homeodomain protein
SwissprotP487850.0PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A078I3880.0A0A078I388_BRANA; BnaA01g07010D protein
STRINGBra011153.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86992738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.20.0pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]