PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00076786001
Common NameGSBRNA2T00076786001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 345aa    MW: 38803.7 Da    PI: 7.6696
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00076786001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.55.2e-18695197
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
                         ffk++   ++++s  + +p ++ +e  ++   +kt  l+ ++g   W+v +   k+++++++++GW++Fv++n L++gD+++F +dg+++f 
  GSBRNA2T00076786001  6 FFKIF--LSHFSSESMAIPASYYDELPLV--LPKTALLQGSDGgCFWKVAM--VKRRDEVYFGQGWSKFVEDNCLRDGDVLTFVYDGSRSF- 90
                         88888..89999999*********99998..8889****977769******..9999*****************************98888. PP

                         .EEEEE CS
                   B3 92 lvvkvf 97
                          +v ++
  GSBRNA2T00076786001 91 -TVDIY 95
                         .77665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-19396IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-21496IPR015300DNA-binding pseudobarrel domain
CDDcd100173.00E-16495No hitNo description
PROSITE profilePS5086313.197498IPR003340B3 DNA binding domain
PfamPF023625.3E-15695IPR003340B3 DNA binding domain
SMARTSM010194.0E-21698IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-8245328IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-6245332IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.07251341IPR003340B3 DNA binding domain
PROSITE profilePS508636.005306341IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAPPGFFKIF LSHFSSESMA IPASYYDELP LVLPKTALLQ GSDGGCFWKV AMVKRRDEVY  60
FGQGWSKFVE DNCLRDGDVL TFVYDGSRSF TVDIYGGSRA CKEVRAVAQV ISVDDDDDKE  120
DTNTSSEPEM AQTVPNARNQ EDSNIIEPEV AQRVPRTRNK GKKRVVVQDS DDSFISEDSN  180
SLSDSSYSPP NDDTLLDVTP KVTNSRKKGE LRSVNSNVGS TSKSSGSVSR KRQSTIKNPE  240
VYLDDPNNVC FEIIIKNRIY ELNVPKQIVK DYCLKFQAYV CYIDNHGKLE ARAATWQDQR  300
VTIKKWERIC KRNGLKKGDR LLCEIFRKEG LVYAVKIHVV TTTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A5e-1469611100At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00076786001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128723.10.0PREDICTED: B3 domain-containing protein At4g34400-like
TrEMBLA0A078I3190.0A0A078I319_BRANA; BnaA01g07410D protein
STRINGBo1g016660.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.12e-75B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]