PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00076116001
Common NameGSBRNA2T00076116001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 479aa    MW: 55478.6 Da    PI: 5.2352
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00076116001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1761.1e-5461331128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtdeel+++yLk+k++g ++el evi+evd+yk+ePwdLp k  + ++++ewyfFs+rd+ky++g+r+nratk gyWkatgk
  GSBRNA2T00076116001   6 LPPGFRFHPTDEELITYYLKRKINGLEIEL-EVIAEVDLYKCEPWDLPgKsLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGK 94 
                          79****************************.99***************6345667999******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v   +++++g+kktLv+y+grap+g +t Wvmheyrl
  GSBRNA2T00076116001  95 DRRVSW-RDRAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133
                          *****9.8899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-634157IPR003441NAC domain
PROSITE profilePS5100561.1336157IPR003441NAC domain
PfamPF023657.0E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MSPVSLPPGF RFHPTDEELI TYYLKRKING LEIELEVIAE VDLYKCEPWD LPGKSLLPSK  60
DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH  120
GIRTGWVMHE YRLDENECEP SAYGMQDAYA LCRVFKKIVI EAKPRDQHRS YIHAMSNVSG  180
NSSFDPCSDL EISSTTHQVQ NAFRPRIGNG RFNSNASNEN WSQYYGSSYP PFPTPYKVNN  240
EIECSMLQHN ISLPPLRIEN SAVCNYDFYN TSTTHNNNHG VLEDFTFAES NSNHYNNTVG  300
DQVIHVGNYD EPLIMSNNYM NQGYIEEQKI ISTFDDNNQD LGFHGDNTNI NIDIDDFFSF  360
DMYNEENVNR VEANEEDVNI NEAVDSSGFE VVEEEIRVNN QMLISTYQTT KILYHQVVPS  420
HTLKVHINLI NHNVEDRILF IEEDSDSWVQ RAEKIAKIKL NLVSLIAQQY YKYLTIFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-55115712165NO APICAL MERISTEM PROTEIN
1ut4_B3e-55115712165NO APICAL MERISTEM PROTEIN
1ut7_A3e-55115712165NO APICAL MERISTEM PROTEIN
1ut7_B3e-55115712165NO APICAL MERISTEM PROTEIN
4dul_A3e-55115712165NAC domain-containing protein 19
4dul_B3e-55115712165NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269|PubMed:25081480}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00076116001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130344.10.0PREDICTED: NAC domain-containing protein 45 isoform X2
SwissprotA4VCM00.0NAC45_ARATH; NAC domain-containing protein 45
TrEMBLA0A078I2230.0A0A078I223_BRANA; BnaA05g32430D protein
STRINGBra032009.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44111852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03200.10.0NAC domain containing protein 45
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]