PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00075632001
Common NameGSBRNA2T00075632001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 281aa    MW: 32000 Da    PI: 8.3955
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00075632001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.74.5e-53101391128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+ +yL+kkv++ +++l +vi++vdiyk++PwdLp+k+  +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk
  GSBRNA2T00075632001  10 LPPGFRFHPTDEELILHYLRKKVSSLPVPL-SVIADVDIYKSDPWDLPAKAPFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDK 98 
                          79****************************.99***************988899************************************ PP

                  NAM  91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +++     +e++g+kk Lvfy+g+ pkg+kt+W+mheyrl
  GSBRNA2T00075632001  99 LIVVPnvgVNEKIGIKKALVFYRGKPPKGVKTNWIMHEYRL 139
                          ***997776778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-637174IPR003441NAC domain
PROSITE profilePS5100560.88110174IPR003441NAC domain
PfamPF023655.0E-2811139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MISKDPRSSL PPGFRFHPTD EELILHYLRK KVSSLPVPLS VIADVDIYKS DPWDLPAKAP  60
FGEKEWYFFS PRDRKYPNGA RPNRAAASGY WKATGTDKLI VVPNVGVNEK IGIKKALVFY  120
RGKPPKGVKT NWIMHEYRLA ETLSPKRVDH SGSDSQFNNL GDRNDWVLCR IYKKSHTSLS  180
PPHVATGTSN QEHEENDKET FIVSETLLPN LENNQTLKRQ KSSFSNLLDA TDLTFLTNFL  240
NETPENHTEQ EFSFMFENFS NPNIYGNPYL DQNLPRLSPS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-69917816169NO APICAL MERISTEM PROTEIN
1ut4_B3e-69917816169NO APICAL MERISTEM PROTEIN
1ut7_A3e-69917816169NO APICAL MERISTEM PROTEIN
1ut7_B3e-69917816169NO APICAL MERISTEM PROTEIN
3swm_A3e-69917819172NAC domain-containing protein 19
3swm_B3e-69917819172NAC domain-containing protein 19
3swm_C3e-69917819172NAC domain-containing protein 19
3swm_D3e-69917819172NAC domain-containing protein 19
3swp_A3e-69917819172NAC domain-containing protein 19
3swp_B3e-69917819172NAC domain-containing protein 19
3swp_C3e-69917819172NAC domain-containing protein 19
3swp_D3e-69917819172NAC domain-containing protein 19
4dul_A3e-69917816169NAC domain-containing protein 19
4dul_B3e-69917816169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.112841e-178leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00075632001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747601e-176KF974760.1 Brassica napus NAC transcription factor 47-1 (NAC47-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585389.10.0PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 2
SwissprotQ84TD61e-165NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A078HYD20.0A0A078HYD2_BRANA; BnaC05g47490D protein
STRINGBo5g148420.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77232540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-168NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]