PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00075524001

Common Name

GSBRNA2T00075524001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 178aa MW: 20687.2 Da PI: 8.5732

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00075524001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.1	3.8e-13	69	127	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +r+rr+ +NRe+ArrsR R k++ieeL++ v++L N+ L +++ +l + + +e+ GSBRNA2T00075524001 69 RRARRMVSNRESARRSRMRTKKQIEELQQQVEQLMILNHNLSEKVIHLLESNHQILQEN 127 79*******************************************99999999888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.6E-11	65	129	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.427	67	130	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.5E-10	69	125	No hit	No description
SuperFamily	SSF57959	1.75E-10	69	121	No hit	No description
Pfam	PF00170	2.0E-10	69	127	IPR004827	Basic-leucine zipper domain
CDD	cd14702	3.17E-14	70	121	No hit	No description
PROSITE pattern	PS00036	0	72	87	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MESSVHRSHH CFDILEGMSP QDDHFNSAFL PNANFHVPIQ SLPPNSSTHN KNNRSHLNPT 60 IYDNEGLERR ARRMVSNRES ARRSRMRTKK QIEELQQQVE QLMILNHNLS EKVIHLLESN 120 HQILQENSQL KEKVSSFQIL MAEMQIPMRN VDGSINDRVV NHLRGETLNR TNDFFGR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.10918	3e-92	microspore-derived embryo

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00075524001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC149635	0.0	AC149635.1 Genomic sequence for broccoli [Brassica oleracea L. (Italica group)] BAC clone B19N3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013721933.1	1e-113	basic leucine zipper 43-like
TrEMBL	A0A078HWI9	1e-126	A0A078HWI9_BRANA; BnaAnng06600D protein
STRING	Bo2g161130.1	1e-107	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6185	25	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60830.1	5e-65	basic leucine-zipper 70

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]