PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00074775001
Common NameGSBRNA2T00074775001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HRT-like
Protein Properties Length: 377aa    MW: 42049.3 Da    PI: 8.8941
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00074775001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like48.81.2e-15181211131
             HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                          +CGv+ edG++C + Pv gRKRC eH G+Ri
  GSBRNA2T00074775001 181 VCGVLQEDGTTCLTAPVTGRKRCTEHRGQRI 211
                          7*****************************7 PP
2HRT-like45.11.7e-14229259131
             HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                          iCGvil     C+ +Pv gRKRCe HKGmR+
  GSBRNA2T00074775001 229 ICGVILPEMVRCRSKPVSGRKRCEDHKGMRV 259
                          8*****************************7 PP
3HRT-like29.71.1e-09301327228
             HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKG 28 
                          C +++++G +C+r++  g KRC++HK+
  GSBRNA2T00074775001 301 CEATTKNGLPCTRSAPNGSKRCWQHKD 327
                          99************************7 PP
4HRT-like59.45.9e-19344374131
             HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                          +CGv+l +GsvC+++PvkgRKRC+eHKGmRi
  GSBRNA2T00074775001 344 VCGVKLHNGSVCEKTPVKGRKRCQEHKGMRI 374
                          7*****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MYKRDDYVRN KPDGVFSRWQ GFARSMLLPK PFSETAELRR TVADYSLISR GLAPKILTGA  60
KGNREDLRVG KDFVGSRYRV QEPIQGLGVA VNIHDADDIS HGQTESFRTR LRSYGRPVPL  120
LKKLGDNASQ TITQKKTGGR SKDKKHGFEE ERDVSCVEPE ENNNTNSRHD DIVDGSDSAS  180
VCGVLQEDGT TCLTAPVTGR KRCTEHRGQR ISCVHSVKKP PCEEETEEIC GVILPEMVRC  240
RSKPVSGRKR CEDHKGMRVN AFFFLLNPTD RDKILKEDNK SKPETLTSSM NQEEPGESHS  300
CEATTKNGLP CTRSAPNGSK RCWQHKDETV DQKSSENVQT STTVCGVKLH NGSVCEKTPV  360
KGRKRCQEHK GMRITS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that negatively modulates gibberellin-mediated developmental processes. May act as transcriptional repressor of giberellin controlled genes. Binds DNA without sequence preference. {ECO:0000269|PubMed:16244914}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00074775001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5335060.0AY533506.1 Brassica napus effector of transcription mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013741304.10.0protein EFFECTOR OF TRANSCRIPTION-like
SwissprotA2RQG70.0ET_BRANA; Protein EFFECTOR OF TRANSCRIPTION
TrEMBLA0A078JPU50.0A0A078JPU5_BRANA; BnaA01g35250D protein
STRINGBra026458.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29542763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26170.11e-108
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]