PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00074725001
Common NameGSBRNA2T00074725001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 247aa    MW: 28282.3 Da    PI: 9.6909
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00074725001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg WT+eEd  lv +++++G ++W + +++ g++R++k+c++rw++yl
  GSBRNA2T00074725001 14 RGEWTAEEDRMLVAYINKYGVRDWGALPKRAGLHRCGKSCRLRWLNYL 61
                         89********************************************97 PP
2Myb_DNA-binding54.82.1e-1767111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +g++T++E++ +++ + +lG++ W++Ia+ m+ +Rt++++k++w++ 
  GSBRNA2T00074725001  67 KGKFTPQEEDDIIKFHSLLGNR-WAAIAKQMP-NRTDNDIKNHWNSC 111
                          79********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.184961IPR017930Myb domain
SuperFamilySSF466893.28E-3011108IPR009057Homeodomain-like
SMARTSM007179.2E-161363IPR001005SANT/Myb domain
PfamPF002491.1E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-231568IPR009057Homeodomain-like
CDDcd001677.46E-111661No hitNo description
PROSITE profilePS5129425.57362116IPR017930Myb domain
SMARTSM007171.4E-1566114IPR001005SANT/Myb domain
PfamPF002492.0E-1667111IPR001005SANT/Myb domain
CDDcd001671.42E-969109No hitNo description
Gene3DG3DSA:1.10.10.602.8E-2569116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGRTTWFDVD GIKRGEWTAE EDRMLVAYIN KYGVRDWGAL PKRAGLHRCG KSCRLRWLNY  60
LKPGIKKGKF TPQEEDDIIK FHSLLGNRWA AIAKQMPNRT DNDIKNHWNS CLKKRLRRSG  120
IDPMTHEPIK ATSSSTRSSP AQRHSSSTTS FSLSSTGSVR LLNKLAAGIS SRKLALDRIR  180
TVMISSEPRE VDEEEKMMIS SRKEEEKVIG CFMEIDKNLI TTMSLDELAC DSSYYYYDDW  240
LRGCFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in salt stress response. Confers tolerance to salt stress (PubMed:22575450). Involved in distinct cellular processes in response to osmotic stress, including control of primary metabolism and negative regulation of short-term transcriptional responses to osmotic stress (PubMed:19211694). Can activate the steps necessary for aliphatic suberin synthesis and deposition of cell wall-associated suberin-like lamellae. Involved in the production of aliphatic suberin under abiotic stress conditions (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:22575450, ECO:0000269|PubMed:25060192}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00074725001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:19211694, PubMed:25060192). Induced by osmotic stress (PubMed:19211694). Induced by abscisic acid (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:25060192}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619876.10.0PREDICTED: transcription factor MYB34-like
SwissprotQ9M0J53e-56MYB41_ARATH; Transcription factor MYB41
TrEMBLA0A078HV830.0A0A078HV83_BRANA; BnaC02g22880D protein
TrEMBLA0A0D3AQH40.0A0A0D3AQH4_BRAOL; Uncharacterized protein
STRINGBo2g081100.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74430.11e-109myb domain protein 95
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]