PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00074505001

Common Name

GSBRNA2T00074505001, LOC106379212

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YC

Protein Properties

Length: 260aa MW: 28833.1 Da PI: 5.4511

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00074505001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	60.7	3e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P +rikki+++dedv +i+ +P l+ska elf+ +l ++ + + +tl+ ++++v ++fdfl d+v + GSBRNA2T00074505001 6 QTRFPATRIKKIMQTDEDVGKIAMAVPLLVSKALELFLQDLCNHTYDVTLSRGAKTLNSVHLKQCVHACNVFDFLRDVVSK 86 789***************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.3E-25	2	72	IPR009072	Histone-fold
Pfam	PF00808	1.1E-17	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	6.74E-19	18	88	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MKKKLQTRFP ATRIKKIMQT DEDVGKIAMA VPLLVSKALE LFLQDLCNHT YDVTLSRGAK 60 TLNSVHLKQC VHACNVFDFL RDVVSKVPDL GGSEGEDRPP TKRRKLVDKS ISNDKDMKTT 120 DMVTSQTDFA KHSGGGGGRG RGQGGGRMGN DQSLKFEDDS PEGSKSPSPE NWSLSHEAAP 180 WKKAASHKNN HRNTELKVRD FDLNVELDEN GEFATSPERG IEGRPGWPLF GINDMKIDSD 240 QREVSAEEED YDEESIDQD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-23	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00074505001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013674673.1	0.0	dr1-associated corepressor
TrEMBL	A0A078HZR2	0.0	A0A078HZR2_BRANA; BnaC02g08740D protein
STRING	Bo2g018090.1	1e-168	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13968	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	2e-97	NF-YC family protein

Link Out ? help Back to Top
Entrez Gene	106379212

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]