PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00074272001

Common Name

GSBRNA2T00074272001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ERF

Protein Properties

Length: 180aa MW: 19711 Da PI: 4.2642

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00074272001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36.6	1.2e-11	5	47	2	48
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 + GVr + +g+W+AeIr p + +++++lg++ t eeA ka+ GSBRNA2T00074272001 5 KPVGVRLRQ-SGKWAAEIRNPLT---KTKVWLGTYATLEEAGKAYAD 47 678*999.7*****743...4***************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	2.7E-7	5	45	IPR001471	AP2/ERF domain
SMART	SM00380	5.2E-10	5	68	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	15.356	5	62	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.29E-12	7	56	IPR016177	DNA-binding domain
CDD	cd00018	7.25E-16	7	45	No hit	No description
Gene3D	G3DSA:3.30.730.10	2.7E-16	8	60	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MQVNKPVGVR LRQSGKWAAE IRNPLTKTKV WLGTYATLEE AGKAYADKKV EFDASVASAN 60 SQCLRSAASK EKVSLRKDVA ASGDLTKEGF DLSELEIPDL SFLAAEEKSG AKAAGEMDFD 120 YFFKDEDYDH LFDDFSVVDN VNNVSLPSEL PDCDFTDVEL EHDDMKFAFA APPLNIACP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.11194	1e-161	microspore

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00074272001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013642107.1	1e-128	ethylene-responsive transcription factor ERF116-like
Refseq	XP_013642108.1	1e-128	ethylene-responsive transcription factor ERF116-like
Refseq	XP_013642112.1	1e-128	ethylene-responsive transcription factor ERF116-like
Refseq	XP_022546701.1	1e-128	ethylene-responsive transcription factor ERF116-like
Refseq	XP_022546702.1	1e-128	ethylene-responsive transcription factor ERF116-like
Refseq	XP_022546703.1	1e-128	ethylene-responsive transcription factor ERF116-like
Refseq	XP_022546708.1	1e-128	ethylene-responsive transcription factor ERF116-like
Swissprot	Q8GW17	2e-50	EF116_ARATH; Ethylene-responsive transcription factor ERF116
TrEMBL	A0A078HXP8	1e-128	A0A078HXP8_BRANA; BnaA09g28560D protein
TrEMBL	M4E7I8	1e-126	M4E7I8_BRARP; Uncharacterized protein
STRING	Bra024743.1-P	1e-126	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15119	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25470.2	5e-38	ERF family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]