PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00074059001 | ||||||||
Common Name | GSBRNA2T00074059001, LOC106415947 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 294aa MW: 33097 Da PI: 5.52 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.5 | 1.2e-27 | 101 | 161 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqKe++gs +pr+Y+rCt++ +C + k+v++s++dp+++e++Y g+H+++ GSBRNA2T00074059001 101 DDGYCWRKYGQKEIHGSINPRGYFRCTHRftqNCLAVKQVQKSDRDPSIFEVKYVGSHTCN 161 8***************************9999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-25 | 93 | 162 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.138 | 95 | 163 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.14E-23 | 98 | 161 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.5E-35 | 100 | 162 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.6E-23 | 101 | 160 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MVMEEKLVIN ELEQGRELAK RLMSNLKDTS SIESSKSLIS EILSIYQNAI SMLDDKKVLK 60 RSREIDDKDS KNVIKKRKVF EKKTEKVSFF VGAGQEKGSI DDGYCWRKYG QKEIHGSINP 120 RGYFRCTHRF TQNCLAVKQV QKSDRDPSIF EVKYVGSHTC NNTTTSPKTP NFSVSTFQEG 180 NTADEQREDI KPTKTEEAMM SFEDLESKKN IFRTFSFSNY EFENGGGGWK GNLFHENQLS 240 PAATTSGSGI TSEIATAPAS VENSETADSY FSSLDNIIDF GPDWLLSCDV LNW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-21 | 99 | 160 | 7 | 68 | OsWRKY45 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in guard cells, hypocotyls, and in the vascular tissues of cotyledon and root (PubMed:24773321). Mostly expressed in roots, at lower levels in leaves and petioles, and, to a lower extent, in stems, flowers and siliques (PubMed:22325892). {ECO:0000269|PubMed:22325892, ECO:0000269|PubMed:24773321}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of osmotic stress responses and stomatal movement (PubMed:24773321). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Positive regulator of EDS1-dependent defense against E.amylovora (PubMed:22316300). Together with WRKY70 and WRKY53, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). Together with WRKY54 and WRKY70, promotes brassinosteroid (BR)-regulated plant growth but prevent drought response by modulating gene expression (PubMed:28576847). {ECO:0000250, ECO:0000269|PubMed:22316300, ECO:0000269|PubMed:22325892, ECO:0000269|PubMed:24773321, ECO:0000269|PubMed:28576847}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00074059001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt and hydrogen peroxide treatments (PubMed:24773321). Induced by salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Up-regulated by E.amylovora (PubMed:22316300). Triggered by P.syringae (PubMed:22325892). {ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22316300, ECO:0000269|PubMed:22325892, ECO:0000269|PubMed:24773321}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM585284 | 0.0 | HM585284.1 Brassica rapa subsp. chinensis WRKY46 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013712213.1 | 0.0 | probable WRKY transcription factor 46 | ||||
Swissprot | Q9SKD9 | 1e-144 | WRK46_ARATH; Probable WRKY transcription factor 46 | ||||
TrEMBL | A0A078HZB0 | 0.0 | A0A078HZB0_BRANA; BnaC04g01210D protein | ||||
STRING | Bo4g009270.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4888 | 23 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 1e-125 | WRKY DNA-binding protein 46 |
Link Out ? help Back to Top | |
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Entrez Gene | 106415947 |