PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00074031001

Common Name

GSBRNA2T00074031001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HRT-like

Protein Properties

Length: 445aa MW: 50060.1 Da PI: 8.937

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00074031001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	54.3	2.3e-17	252	282	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGvile+G +C+++PvkgRKRC eHKG+Ri GSBRNA2T00074031001 252 VCGVILENGACCSKSPVKGRKRCVEHKGQRI 282 7*****************************7 PP
2	HRT-like	51.6	1.5e-16	310	340	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGvil + +C+++Pv+gRKRCe HKGmRi GSBRNA2T00074031001 310 TCGVILPNMEPCNKKPVPGRKRCEDHKGMRI 340 7*****************************7 PP
3	HRT-like	25.4	2.5e-08	369	395	2	28
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKG 28 C ++++ G +C+r+ +g KRC++HK GSBRNA2T00074031001 369 CEATTKSGAPCTRSSPRGSKRCWQHKE 395 99************************7 PP
4	HRT-like	51.6	1.6e-16	410	439	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv+ dG vC+r+PvkgRKRCeeHKGmR+ GSBRNA2T00074031001 410 CGVKVCDGLVCERSPVKGRKRCEEHKGMRV 439 *****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MGMDFGDGLS FAAVVPTVYK REDYKQTKHD SVFSNWKVLI GSEDWEDFKK GKDGVGRYRV 60 QNLPRKSCPG LYELGVAVID QARKLDSDDV LAAYLGQAES VRSRLQSYGR SGAHLRTAGL 120 FEDIFMKHGS VVYRWAPMGS KREAEATEGM LLSTFDYAWN KGSNGERRQL DLLKKLGDLE 180 FISNRESRVS ERVLFPFLQN QVSSEERKLS CDVVGEEKSS NLLTSIIKLS RSRPQPVSDK 240 LDEVNSSCSD SVCGVILENG ACCSKSPVKG RKRCVEHKGQ RICRVSPVKQ QPETLVYRQD 300 YKHQDTDVTT CGVILPNMEP CNKKPVPGRK RCEDHKGMRI NAFLFLLNRT DREKTVKEEE 360 EEVASPRFCE ATTKSGAPCT RSSPRGSKRC WQHKEKENIH PVVAETQVRC GVKVCDGLVC 420 ERSPVKGRKR CEEHKGMRVI IIPS*

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MGMDFGDGLS FAAVVPTVYK REDYKQTKHD SVFSNWKVLI GSEDWEDFKK GKDGVGRYRV  60
QNLPRKSCPG LYELGVAVID QARKLDSDDV LAAYLGQAES VRSRLQSYGR SGAHLRTAGL  120
FEDIFMKHGS VVYRWAPMGS KREAEATEGM LLSTFDYAWN KGSNGERRQL DLLKKLGDLE  180
FISNRESRVS ERVLFPFLQN QVSSEERKLS CDVVGEEKSS NLLTSIIKLS RSRPQPVSDK  240
LDEVNSSCSD SVCGVILENG ACCSKSPVKG RKRCVEHKGQ RICRVSPVKQ QPETLVYRQD  300
YKHQDTDVTT CGVILPNMEP CNKKPVPGRK RCEDHKGMRI NAFLFLLNRT DREKTVKEEE  360
EEVASPRFCE ATTKSGAPCT RSSPRGSKRC WQHKEKENIH PVVAETQVRC GVKVCDGLVC  420
ERSPVKGRKR CEEHKGMRVI IIPS*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: During embryogenesis, expressed in the embryo at the late torpedo/cotyledon stage, at the onset of maturation. Not expressed during early stages of seed development or in mature seeds. {ECO:0000269\|PubMed:22226340}.
Uniprot	TISSUE SPECIFICITY: Expressed in vascular tissues of stems, hypocotyls, leaves and flowers. Expressed in the vascular bundles of xylem in shoot parenchyma cells. Expressed in the remnant cytoplasm of differentiated fiber cells and in protoxylem element of parenchymal cells. {ECO:0000269\|PubMed:17991462}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269\|PubMed:17991462, ECO:0000269\|PubMed:22226340}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00074031001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB013392	1e-46	AB013392.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19.
GenBank	CP002688	1e-46	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013691245.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like
Swissprot	F4K933	0.0	ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	A0A078HZ95	0.0	A0A078HZ95_BRANA; BnaC04g00960D protein
STRING	Bo01139s050.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	0.0	effector of transcription2

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]