PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00073087001 | ||||||||
Common Name | GSBRNA2T00073087001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 287aa MW: 32766 Da PI: 5.9334 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.1 | 2.1e-15 | 97 | 148 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++Y+k+L+ GSBRNA2T00073087001 97 QRMTHIAVERNRRKQMNEYLAVLRSLMPSS---YAQRGDQASIVGGAINYVKKLE 148 79****************************...*******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.8E-14 | 95 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.07E-13 | 95 | 152 | No hit | No description |
SuperFamily | SSF47459 | 5.1E-17 | 96 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.12 | 96 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-12 | 97 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-10 | 102 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MPLESVVYPQ DPLSYPSTCK DFMFQDLYYQ EEVVSFVEND KEEDRQWRDY HQYPLLPSLE 60 EELGLPAIDM ESHPPLQQRR KRRRTRSNKN VEEIENQRMT HIAVERNRRK QMNEYLAVLR 120 SLMPSSYAQR GDQASIVGGA INYVKKLEHI LQSMEPNRTT TITHEANTST SSLVDPFSDF 180 FSFPQYSTKS SSITEGSSSP AEIEVTVAEG HANIKIMAKK KPKQLLKLVA SLQSLRLTLL 240 HLNVTTLDNS ILYSISVKVE EGSQLTTVDD IATALNQIIR RIQEES* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 77 | 83 | QRRKRRR |
2 | 79 | 83 | RKRRR |
3 | 79 | 84 | RKRRRT |
4 | 97 | 108 | RMTHIAVERNRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00073087001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009110135.1 | 0.0 | PREDICTED: transcription factor bHLH94-like | ||||
Swissprot | Q9SK91 | 1e-154 | BH094_ARATH; Transcription factor bHLH94 | ||||
TrEMBL | A0A078HVV1 | 0.0 | A0A078HVV1_BRANA; BnaA08g20810D protein | ||||
STRING | Bra016377.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1116 | 27 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22490.1 | 1e-131 | bHLH family protein |
Publications ? help Back to Top | |||
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