PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00072417001

Common Name

GSBRNA2T00072417001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 248aa MW: 27912 Da PI: 8.8563

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00072417001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.5	5.3e-32	24	77	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+av+ LGG+ kAtPk +l++m+v+gLt++hvkSHLQ+YR GSBRNA2T00072417001 24 PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVQGLTISHVKSHLQMYRG 77 8****************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.1E-29	20	77	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.168	20	80	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.1E-22	24	76	IPR006447	Myb domain, plants
SuperFamily	SSF46689	4.3E-15	24	76	IPR009057	Homeodomain-like
Pfam	PF00249	7.3E-8	25	76	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MGKCGRSSDG GISGVRPYVR SPVPRLRWTP ELHRSFVHAV DLLGGQYKAT PKLVLKIMDV 60 QGLTISHVKS HLQMYRGSRP TLLGRQEESS SSSSRRRRRQ DNGDQLHDNL SEHARNDCLF 120 GFHSFNFRRE QNSGTDNDDD DFLNIMNMAR TKTFAGNGES IKFQPYHFLE AQSMKSNMGN 180 EHEEEELSLS LSLNHPPNHQ QRWRSNASSS LSEASEAVSS PFTSRDCFAS SKIDLNLNLS 240 FPSLLRS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-20	25	79	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-20	25	79	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-20	25	79	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-20	25	79	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00072417001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ630486	0.0	AJ630486.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g14600.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013584684.1	1e-151	PREDICTED: putative Myb family transcription factor At1g14600 isoform X2
Refseq	XP_013696213.1	1e-151	putative Myb family transcription factor At1g14600 isoform X2
Swissprot	Q700D9	1e-116	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A078HRA3	0.0	A0A078HRA3_BRANA; BnaC05g10810D protein
TrEMBL	A0A3N6UHQ9	0.0	A0A3N6UHQ9_BRACR; Uncharacterized protein
STRING	Bo5g019810.1	1e-148	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4694	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	1e-100	G2-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]