PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00072405001 | ||||||||
Common Name | GSBRNA2T00072405001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 130aa MW: 15121 Da PI: 7.7763 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59 | 7.8e-19 | 63 | 115 | 3 | 55 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 k+ ++tkeq + Le+ F++n++++ +++e LA++l L rq+ vWFqNrRa++ GSBRNA2T00072405001 63 KKLRLTKEQSRLLEDSFRQNHTLNPKQKETLAEHLMLRPRQIEVWFQNRRARY 115 66789**********************************************96 PP | |||||||
2 | HD-ZIP_I/II | 82.4 | 6.4e-27 | 63 | 115 | 2 | 54 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt 54 kk+rl+keq++lLE+sF+++++L+p++K++la++L l+prq++vWFqnrRAR+ GSBRNA2T00072405001 63 KKLRLTKEQSRLLEDSFRQNHTLNPKQKETLAEHLMLRPRQIEVWFQNRRARY 115 9***************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.17E-17 | 47 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.208 | 58 | 118 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.2E-11 | 60 | 122 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.2E-16 | 63 | 115 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.71E-14 | 63 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.8E-18 | 67 | 115 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MAILTENSSN LDLTISTPGF SSSPRSDEGS SGEREQLKLD MNRLPSSHED EELSHGGSAP 60 PCKKLRLTKE QSRLLEDSFR QNHTLNPKQK ETLAEHLMLR PRQIEVWFQN RRARYGFFFF 120 FLIHFLHYW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00072405001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018455112.1 | 5e-71 | PREDICTED: homeobox-leucine zipper protein ATHB-17-like | ||||
Refseq | XP_018455149.1 | 5e-71 | PREDICTED: homeobox-leucine zipper protein ATHB-17-like | ||||
Swissprot | Q8S9N6 | 2e-61 | ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17 | ||||
TrEMBL | A0A078HWE1 | 3e-90 | A0A078HWE1_BRANA; BnaA09g18620D protein | ||||
STRING | Bo2g134170.1 | 1e-65 | (Brassica oleracea) | ||||
STRING | Bo9g070030.1 | 4e-66 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4890 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 2e-53 | homeobox-leucine zipper protein 17 |
Publications ? help Back to Top | |||
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