PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00071564001

Common Name

GSBRNA2T00071564001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

CPP

Protein Properties

Length: 544aa MW: 60074.5 Da PI: 4.8282

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00071564001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	47.8	2.8e-15	388	426	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+C+Ck+s+Clk+YC+Cfaag +C e C+C++C+N+ GSBRNA2T00071564001 388 SCKRCRCKRSRCLKLYCDCFAAGLYCVEPCSCQNCFNRP 426 589**********************************85 PP
2	TCR	44	4.5e-14	474	511	2	39
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 +++gCnCkks C kkYCeC+ g+ Cs +C+C +CkN GSBRNA2T00071564001 474 HMRGCNCKKSGCSKKYCECYLVGVGCSASCRCIGCKNI 511 889**********************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.7E-16	387	428	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	33.87	388	513	IPR005172	CRC domain
Pfam	PF03638	7.0E-11	390	425	IPR005172	CRC domain
SMART	SM01114	5.6E-13	473	514	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.5E-11	476	510	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 544 aa Download sequence Send to blast
MIQTYGAYYF CQNFRTYFFV YIYIYIYMQD SPVFQYINGL SPIEPVKADH AFHSFALASP 60 SSLFSSPQID CVKRHHSRDL SSPVLSLGRE DVLVELKCGG PDEEMANVSE TKAFKEQVKL 120 AIEMASSLST QMGSSDEVVV PMDAENEVMK QSGELCTQLL NELDADSDMV IQTEEMEAEN 180 GSGEQEIPNA KDSRICSFTS VPQQFSNHSG NVVQPCSSVH VAAGALDTTL SSSSNVAAFD 240 STAKAEDDDQ EANLQLSSKQ RSVRRRCLTF DLGGSYKRVS LRDSTNDFPF DFTSINEAPS 300 PQKCIDSSKQ ETDEILPVPG TIGLHFNALV NPSRNKFTSK DGCVLSHAEE EFTTPVSTIK 360 DLVSCDNQIT EEAPERSMEG EWVEELGSCK RCRCKRSRCL KLYCDCFAAG LYCVEPCSCQ 420 NCFNRPIHED IVIKSRRRVE ARNPLAFAPK VVLTSASAAY FGEESNKTPA SARHMRGCNC 480 KKSGCSKKYC ECYLVGVGCS ASCRCIGCKN ILCQTNEQFH LPCAVESDAV TINEEAKDHC 540 DYI*

Sequence ? help Back to Top

Protein Sequence Length: 544 aa Download sequence Send to blast

MIQTYGAYYF CQNFRTYFFV YIYIYIYMQD SPVFQYINGL SPIEPVKADH AFHSFALASP  60
SSLFSSPQID CVKRHHSRDL SSPVLSLGRE DVLVELKCGG PDEEMANVSE TKAFKEQVKL  120
AIEMASSLST QMGSSDEVVV PMDAENEVMK QSGELCTQLL NELDADSDMV IQTEEMEAEN  180
GSGEQEIPNA KDSRICSFTS VPQQFSNHSG NVVQPCSSVH VAAGALDTTL SSSSNVAAFD  240
STAKAEDDDQ EANLQLSSKQ RSVRRRCLTF DLGGSYKRVS LRDSTNDFPF DFTSINEAPS  300
PQKCIDSSKQ ETDEILPVPG TIGLHFNALV NPSRNKFTSK DGCVLSHAEE EFTTPVSTIK  360
DLVSCDNQIT EEAPERSMEG EWVEELGSCK RCRCKRSRCL KLYCDCFAAG LYCVEPCSCQ  420
NCFNRPIHED IVIKSRRRVE ARNPLAFAPK VVLTSASAAY FGEESNKTPA SARHMRGCNC  480
KKSGCSKKYC ECYLVGVGCS ASCRCIGCKN ILCQTNEQFH LPCAVESDAV TINEEAKDHC  540
DYI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-17	390	511	12	121	Protein lin-54 homolog
5fd3_B	2e-17	390	511	12	121	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	390	395	RCRCKR

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00071564001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189329	0.0	AC189329.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB037C07, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013680988.1	0.0	protein tesmin/TSO1-like CXC 4
Swissprot	Q84JZ8	0.0	TCX4_ARATH; Protein tesmin/TSO1-like CXC 4
TrEMBL	A0A078HSI2	0.0	A0A078HSI2_BRANA; BnaC03g33970D protein
STRING	Bo3g058650.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14840	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04850.1	1e-157	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]