PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00071428001
Common NameGSBRNA2T00071428001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 341aa    MW: 39443.3 Da    PI: 9.0578
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00071428001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF382.1e-12137178646
                          HHHHHHHH.HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
               SRF-TF   6 ksnrqvtf.skRrngilKKAeELSvLCdaevaviifsstgkl 46 
                          +++ + +f   R ++ilKKA ELS+LCd +++vi +  +g+l
  GSBRNA2T00071428001 137 QTRFKKSFlLLREKTILKKALELSILCDNDICVIHYDREGNL 178
                          444444431349************************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0036125184IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-13134219IPR002100Transcription factor, MADS-box
PfamPF003193.2E-7148178IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.335148178IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MVCQIDTYIY FKISKEKYCL SNIIYIHIYL SYVIYDIYII LFIKIENYKH KYIINDPLKL  60
FSISAIVLCH SLYIFSIFFY NMFLSSVISY GLITHNSFLT LRKLSKKLLF CFCHGFSSSS  120
STSTKMKNNN KLSVRNQTRF KKSFLLLREK TILKKALELS ILCDNDICVI HYDREGNLVN  180
AYPEDQSQVK DILQRYNNLS DREKIKKNTN LSQFYNKKLV DEKRRSLTDA EERKRFTKKV  240
GAFKGSLEDK LQIVKDRVRD LLYSQDHQTE PDQSPCLDVI GDHVSASSDQ YLLGPASCAT  300
DASNHESKFS VFLFNHETAT FTQLPNSASS SFDQGLIGTY *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00071428001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591122.11e-144PREDICTED: agamous-like MADS-box protein AGL93
RefseqXP_013592109.11e-144PREDICTED: agamous-like MADS-box protein AGL93
TrEMBLA0A078HPX20.0A0A078HPX2_BRANA; BnaC06g02110D protein
STRINGBo6g015480.11e-143(Brassica oleracea)
STRINGBo6g015500.11e-143(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11759729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27580.14e-42AGAMOUS-like 89
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]