PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00071376001
Common NameGSBRNA2T00071376001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 157aa    MW: 17968 Da    PI: 7.9242
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00071376001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.78.4e-272787259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                         dD y WrKYGqKe+ gs++prsYYrC ++   +Cp+kk+v+r +edp ++ +tY+++H+++
  GSBRNA2T00071376001 27 DDNYVWRKYGQKEILGSRYPRSYYRCNHQkvyKCPAKKQVQRLDEDPYMLRVTYRSSHTCQ 87
                         8***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-272187IPR003657WRKY domain
SuperFamilySSF1182904.58E-252488IPR003657WRKY domain
SMARTSM007741.6E-322688IPR003657WRKY domain
PfamPF031068.7E-252787IPR003657WRKY domain
PROSITE profilePS5081120.7482789IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MYRKKDGAVE TVLVVAARMG NMGTPPDDNY VWRKYGQKEI LGSRYPRSYY RCNHQKVYKC  60
PAKKQVQRLD EDPYMLRVTY RSSHTCQFST TSSFSSTATT PVNYGPNVHN MADLMFENTD  120
SVVPFCEPYF NNDSLVPGAA SYEDSWNSTW QSYDMS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-182787969OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00071376001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013640096.11e-114WRKY transcription factor 55-like isoform X1
SwissprotQ9SHB57e-47WRK55_ARATH; WRKY transcription factor 55
TrEMBLA0A078FM151e-115A0A078FM15_BRANA; BnaC06g13990D protein
STRINGBo6g066790.11e-113(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.15e-41WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]