PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00070963001
Common NameGSBRNA2T00070963001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 376aa    MW: 41420.3 Da    PI: 8.1881
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00070963001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH216.1e-07100123326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                           e C+ f+ +G C++Gd C FaHg
  GSBRNA2T00070963001 100 GEVCPEFRNGGDCSRGDMCGFAHG 123
                          589********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.45E-596127IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-497124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.77998125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-699125IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-4101123IPR000571Zinc finger, CCCH-type
SMARTSM003563133156IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000932Cellular Componentcytoplasmic mRNA processing body
GO:0010494Cellular Componentcytoplasmic stress granule
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDVEHHNSGH IGRPTVDIPP RKLLSSAISP SSPCPEYKAQ KECCYDSDSD DPYAGDHFRM  60
YEFKIRRCTR SRSHDWTDCP FAHPGEKARR RDPRRYHYTG EVCPEFRNGG DCSRGDMCGF  120
AHGVFECWLH PSRYRTEACK DGKHCKRKIC FFAHSPRQLR VLPPSENFVS GGGGSAASSP  180
ASVLSNKNNR CCVFCSHSPT STLLDLSPSS PPLSPANKSA VFSRMSRRHS ALAHKQVLHE  240
LINSLDSFSF KEALTAASLS SPVTMPVTTG ETMLASSNRS NNHRLPPWID VVGDRDLQLQ  300
QSSFKYAFSP SSTPSYLNGQ LPPPSFFSDE FTPRGGRLSD FTVAATAAAE ARGKNSFEVG  360
HSGDLDLGWV NDLLT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.194910.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00070963001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114751e-148AB011475.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9L2.
GenBankAY0349161e-148AY034916.1 Arabidopsis thaliana unknown protein (At5g44260) mRNA, complete cds.
GenBankAY1425421e-148AY142542.1 Arabidopsis thaliana unknown protein (At5g44260) mRNA, complete cds.
GenBankCP0026881e-148CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013712955.20.0zinc finger CCCH domain-containing protein 61-like
SwissprotQ9FKW21e-175C3H61_ARATH; Zinc finger CCCH domain-containing protein 61
TrEMBLA0A078FJF80.0A0A078FJF8_BRANA; BnaA09g17030D protein
STRINGBo9g059770.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44260.11e-171C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]