PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00070575001

Common Name

GSBRNA2T00070575001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 383aa MW: 42081.3 Da PI: 7.3049

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00070575001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17	1.1e-05	269	307	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++++ + L++l+ + +K + a++L++ +eYIk L GSBRNA2T00070575001 269 VRKENLRDQITSLQQLVSPF-----GKTDTASVLQESIEYIKFL 307 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.585	258	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.49E-6	268	311	No hit	No description
SuperFamily	SSF47459	1.27E-10	268	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.9E-9	272	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MLIYNFLHKL KFPDSVFIAE EFQATAAICG SGGGAWWNSP RSVMSPSDHF LSPCFGQREA 60 DSDSGGSTVS IDSTLQMMGL GFSSNSSSDW NQTVLQEDLN SSFISSQDHY HGQGFLSTTS 120 SPYLLNPACS SSSSPSPPSS SLLQTFYDPE PSQYRFLSTT SCSINDSQLS WASSKTSPHH 180 QAAYGIINNF SNSTNSRPFW SSSSTTNLNN TPHNSFVTYS QIIPTRLEDK TKNQKTKGQS 240 ESLKRAKDND SASKKQRIST PSPLPTFKVR KENLRDQITS LQQLVSPFGK TDTASVLQES 300 IEYIKFLHDQ VTVLSTPYMK QGASVQQQHQ KSGKSQDGNE NQELRAHGLC LVPISSTFPV 360 ANETTADFWT PTFGGNSFRY SR*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MLIYNFLHKL KFPDSVFIAE EFQATAAICG SGGGAWWNSP RSVMSPSDHF LSPCFGQREA  60
DSDSGGSTVS IDSTLQMMGL GFSSNSSSDW NQTVLQEDLN SSFISSQDHY HGQGFLSTTS  120
SPYLLNPACS SSSSPSPPSS SLLQTFYDPE PSQYRFLSTT SCSINDSQLS WASSKTSPHH  180
QAAYGIINNF SNSTNSRPFW SSSSTTNLNN TPHNSFVTYS QIIPTRLEDK TKNQKTKGQS  240
ESLKRAKDND SASKKQRIST PSPLPTFKVR KENLRDQITS LQQLVSPFGK TDTASVLQES  300
IEYIKFLHDQ VTVLSTPYMK QGASVQQQHQ KSGKSQDGNE NQELRAHGLC LVPISSTFPV  360
ANETTADFWT PTFGGNSFRY SR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.19678	5e-46	leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00070575001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF380649	0.0	AF380649.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds.
GenBank	AY085602	0.0	AY085602.1 Arabidopsis thaliana clone 159557 mRNA, complete sequence.
GenBank	AY113072	0.0	AY113072.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009113121.1	0.0	PREDICTED: transcription factor bHLH112-like isoform X1
Swissprot	Q94JL3	0.0	BH112_ARATH; Transcription factor bHLH112
TrEMBL	A0A078FL46	0.0	A0A078FL46_BRANA; BnaA09g13660D protein
STRING	Bra027080.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8062	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Chen HC, et al. The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis. Plant Mol. Biol., 2017. 94(4-5): p. 531-548 [PMID:28631168]