PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00069686001

Common Name

GSBRNA2T00069686001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 301aa MW: 32216.9 Da PI: 5.8366

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00069686001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	66.1	6.2e-21	193	255	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++e+kr rrkq+NRe+Ar sR+RK+ae++eL++++++L +eN +L++e+++l+ ++++l+se+ GSBRNA2T00069686001 193 DREVKRRRRKQSNRESARISRLRKQAECDELAQRAEVLNEENASLREEINKLRSQCEELTSEN 255 5899*********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF16596	7.6E-8	66	101	No hit	No description
Pfam	PF16596	1.4E-8	132	171	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.2E-17	186	252	No hit	No description
SMART	SM00338	6.0E-19	193	257	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.4E-19	194	255	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.645	195	258	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.13E-11	196	252	No hit	No description
CDD	cd14702	5.93E-23	198	248	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MPPYGTPTHP YVTMYPPGGM YGHPSIPPGS YPYSPYAMPS PNGMTEASGN TTGGTEVEAK 60 QSEMKEKLPI KRSRGGSLGS LNMITGKNSG ASANGAYSKS AMIIMICDSD LLFNPLYNSG 120 SGGSANGPRD GSVGSQTVPV MPMTAAGVPA PPTNLNIGMD YWGAPTSAST PVHGVVAPVS 180 RDGGRSQPWL QDDREVKRRR RKQSNRESAR ISRLRKQAEC DELAQRAEVL NEENASLREE 240 INKLRSQCEE LTSENTSLKD QLLSFPTLEG VAMDKDEQEP PDTNQTGVAE TKADSYKDSK 300 *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	196	201	KRRRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269\|PubMed:18315949, ECO:0000269\|PubMed:22718771, ECO:0000305\|PubMed:18315949}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00069686001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024004270.1	1e-161	bZIP transcription factor 16 isoform X2
Swissprot	Q501B2	1e-159	BZP16_ARATH; bZIP transcription factor 16
TrEMBL	A0A078HPI7	0.0	A0A078HPI7_BRANA; BnaA04g20520D protein
STRING	Bostr.23794s0549.1.p	1e-161	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3701	25	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35530.1	1e-143	basic region/leucine zipper transcription factor 16

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]