PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00068770001

Common Name

GSBRNA2T00068770001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 395aa MW: 41431.4 Da PI: 6.4564

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00068770001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	137.2	1.4e-42	50	221	3	136
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ ++s +ss+s+ s++ GSBRNA2T00068770001 50 VTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFSsLSVSLRSSGSTLSAPpsk 139 689***************************************************************9998888888888866666777 PP TCP 89 .................................kaaksaa.kskksqksaasalnlakesrakarararertrekmriknkl 136 ++ ++++ +++++q++a++ ++ es +++r r+ ++++e+ k+++ GSBRNA2T00068770001 140 svplygalglthhqyeeqggafgahtppllgfhHHLQQHQqQQHHQQAPAETIPGPDGESFSRKRYRSVDSSKEDGEGKQNE 221 888999999999999999*********99985556665456666666666677777888888888777777776666554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.5E-42	54	214	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.411	55	109	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MDLSDDGAAA RGGSRHLVDP SLSIVPRSTP PEDPTTSSPA AAAATTSEVV TKRSTKDRHT 60 KVDGRGRRIR MPALCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIVAAT GTGTIPANFS 120 SLSVSLRSSG STLSAPPSKS VPLYGALGLT HHQYEEQGGA FGAHTPPLLG FHHHLQQHQQ 180 QQHHQQAPAE TIPGPDGESF SRKRYRSVDS SKEDGEGKQN ENKSLKESEP PAAATGAPMW 240 AVAPTNRSAG GNTFWMLPVP TTAAGNQPAA MESSSNASRA HMWPFGGGGA GAGGGGATHF 300 MAGTGFSFPM DQYRGSPLQL GSFLAQPQQP NQNIGLSMPD SNLGVLAALN AAYPRGGNAN 360 AEQVNNAVEH QEKQQPQQSD QDDDSRDENS NSDG*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MDLSDDGAAA RGGSRHLVDP SLSIVPRSTP PEDPTTSSPA AAAATTSEVV TKRSTKDRHT  60
KVDGRGRRIR MPALCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIVAAT GTGTIPANFS  120
SLSVSLRSSG STLSAPPSKS VPLYGALGLT HHQYEEQGGA FGAHTPPLLG FHHHLQQHQQ  180
QQHHQQAPAE TIPGPDGESF SRKRYRSVDS SKEDGEGKQN ENKSLKESEP PAAATGAPMW  240
AVAPTNRSAG GNTFWMLPVP TTAAGNQPAA MESSSNASRA HMWPFGGGGA GAGGGGATHF  300
MAGTGFSFPM DQYRGSPLQL GSFLAQPQQP NQNIGLSMPD SNLGVLAALN AAYPRGGNAN  360
AEQVNNAVEH QEKQQPQQSD QDDDSRDENS NSDG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.15091	1e-178	seed

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00068770001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022570249.1	0.0	transcription factor TCP8-like
Swissprot	Q9C518	1e-178	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A078HRL4	0.0	A0A078HRL4_BRANA; BnaA09g14960D protein
STRING	Bra027886.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10218	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-147	TCP family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]