PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00068700001
Common NameGSBRNA2T00068700001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 731aa    MW: 83501.4 Da    PI: 9.91
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00068700001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3551.5e-1722971194
                         HHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3 11 lksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                         + ++ l++p  f+++h + k+++kt++l++  s ++Wevk+  ++++    lt+GWk+F  a++L+ gD+++Fk++g++ f  +v
  GSBRNA2T00068700001 22 FHTH-LTIPVVFFSKHIHGKTKKKTVKLRSdASDKTWEVKI--DGRR----LTRGWKDFTTAHDLRIGDIIIFKHEGDMVF--NV 97
                         4455.9**********55567889****997899*******..9998....************************999988..54 PP
2B369.64.1e-22156250398
                          EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                            +++ ++lk++ l+lp   ++++ ++k+++ +++l +++g+sW+  l+ r ++g+y++++GW++F+ +n+ k+gD +vF l+g+ ++++
  GSBRNA2T00068700001 156 VSEVTTSNLKLDTLYLPVGATSSNALNKRCH-EMILVNKEGNSWTASLKLRESGGMYYIRRGWRRFCLDNRRKVGDLFVFNLVGDGKTTP 244
                          45678999*******************9887.*****************************************************9999* PP

                          EEEEE- CS
                   B3  93 vvkvfr 98 
                          ++ v+ 
  GSBRNA2T00068700001 245 MMCVCP 250
                          *99996 PP
3B338.91.6e-12288385199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT-.-TT-EEEEEE-SSS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangL.kegDfvvFkldgrs 88 
                          f++++++ +++ s+ l+lp  f++++g++  + k+++l+d++g +   kl     + +r  l+kGWk F++an++ k g+++v++l++ +
  GSBRNA2T00068700001 288 FLTITLTRYNFISSKLILPIAFTNTNGLS--NYKEIILMDKHGVKRLTKLVQdGPHNNRKGLGKGWKFFCEANDVfKIGESFVLELVW-E 374
                          778888999999**************999..5669**************977744555566*************846***********.7 PP

                          EE..EEEEE-S CS
                   B3  89 efelvvkvfrk 99 
                          ++ +v+k+++k
  GSBRNA2T00068700001 375 DTVPVLKFCSK 385
                          8889****997 PP
4B350.73.2e-163864561794
                          E--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3  17 vlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                           +p  f+++h +   +++kt +l++  s  +Wev +  ++++    lt+GWkeFvka++L++gD++vF+++g+  f  +v
  GSBRNA2T00068700001 386 NIPVAFFSKHvQ-GRHGDKTARLRSdASDTTWEVVI--TGRR----LTGGWKEFVKAHDLRVGDVLVFRHEGELVF--HV 456
                          69********64.456889****997888*******..8888....***********************7664333..44 PP
5B347.72.8e-15508597498
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          + ++ ++l ++ +++p +f++ +g++++   +++l +e grsW++ l ++k+  + +l++GW++F++an ++ g   +Fkl++ +++++v
  GSBRNA2T00068700001 508 ANVTVSSLHEDKVYIPVSFVRPNGLSNTY-CKIVLLNEMGRSWKLSLVHDKS--GSYLRQGWRSFCSANAINGGRY-TFKLVQ-NSETPV 592
                          556778889999***********998655.59***************55544..4679**************9985.****99.555588 PP

                          EEEE- CS
                   B3  94 vkvfr 98 
                          +++++
  GSBRNA2T00068700001 593 IRLYQ 597
                          88776 PP
6B364.61.6e-20614704698
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          +++++l+++ l+l+++f++++g+k+++  +++l++ +g +W + l+ + + +++v+++GW++F++angLk++D + Fkl g +++++v++
  GSBRNA2T00068700001 614 LTPSSLRNDTLYLSRRFVNSNGLKEKC-CEMILKNDNGGTWCLVLRRNETNETTVISRGWRSFCHANGLKVRDPFRFKLAG-TREKPVLQ 701
                          4788999999************99766.5****************98888889**************************98.77778999 PP

                          EE- CS
                   B3  96 vfr 98 
                          ++ 
  GSBRNA2T00068700001 702 FCP 704
                          886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-238105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-219109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.80211103IPR003340B3 DNA binding domain
CDDcd100171.92E-1512100No hitNo description
SMARTSM010199.9E-2414103IPR003340B3 DNA binding domain
PfamPF023626.9E-122495IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-18152242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.19E-16153250No hitNo description
SuperFamilySSF1019361.31E-17153243IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.408154252IPR003340B3 DNA binding domain
SMARTSM010197.7E-24155252IPR003340B3 DNA binding domain
PfamPF023623.9E-21156250IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-15280385IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-15282385IPR015300DNA-binding pseudobarrel domain
CDDcd100172.49E-9287384No hitNo description
PROSITE profilePS508638.572288385IPR003340B3 DNA binding domain
SMARTSM010195.8E-18288386IPR003340B3 DNA binding domain
PfamPF023622.9E-12288386IPR003340B3 DNA binding domain
CDDcd100178.14E-14379457No hitNo description
Gene3DG3DSA:2.40.330.101.9E-17386464IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.716387462IPR003340B3 DNA binding domain
SuperFamilySSF1019361.37E-16387468IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.2E-10387462IPR003340B3 DNA binding domain
PfamPF023628.9E-11387455IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-16504593IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-15504593IPR015300DNA-binding pseudobarrel domain
CDDcd100173.72E-9505596No hitNo description
PROSITE profilePS5086312.125505599IPR003340B3 DNA binding domain
SMARTSM010193.2E-21506599IPR003340B3 DNA binding domain
PfamPF023625.2E-14507597IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.9E-19605705IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-21606709IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.507609705IPR003340B3 DNA binding domain
SMARTSM010196.5E-26610706IPR003340B3 DNA binding domain
PfamPF023624.5E-19613704IPR003340B3 DNA binding domain
CDDcd100171.58E-17613704No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MVNPPLQSPT NPHFFQPLLP GFHTHLTIPV VFFSKHIHGK TKKKTVKLRS DASDKTWEVK  60
IDGRRLTRGW KDFTTAHDLR IGDIIIFKHE GDMVFNVTPF GPSCCEIQYT RSHIIKEEAD  120
TDDDDEDDNE RQYKIRNGLK PKTEPRSSFS FDHCFVSEVT TSNLKLDTLY LPVGATSSNA  180
LNKRCHEMIL VNKEGNSWTA SLKLRESGGM YYIRRGWRRF CLDNRRKVGD LFVFNLVGDG  240
KTTPMMCVCP EEDCSELMSK HLSRGRRSRK TKKRSKWVAS SSSRRNRFLT ITLTRYNFIS  300
SKLILPIAFT NTNGLSNYKE IILMDKHGVK RLTKLVQDGP HNNRKGLGKG WKFFCEANDV  360
FKIGESFVLE LVWEDTVPVL KFCSKNIPVA FFSKHVQGRH GDKTARLRSD ASDTTWEVVI  420
TGRRLTGGWK EFVKAHDLRV GDVLVFRHEG ELVFHVTALG SSCCEVEYTT LDDGDDNKET  480
VLPSDIKPMK KRAKKNPRKK DFCSCFVANV TVSSLHEDKV YIPVSFVRPN GLSNTYCKIV  540
LLNEMGRSWK LSLVHDKSGS YLRQGWRSFC SANAINGGRY TFKLVQNSET PVIRLYQAEH  600
RHEDNTHSYL VGTLTPSSLR NDTLYLSRRF VNSNGLKEKC CEMILKNDNG GTWCLVLRRN  660
ETNETTVISR GWRSFCHANG LKVRDPFRFK LAGTREKPVL QFCPSESNRN TRHVDCSEEA  720
STMASTKQGR *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.56111e-94seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00068700001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623119.10.0PREDICTED: B3 domain-containing protein REM7 isoform X1
TrEMBLA0A078HRD80.0A0A078HRD8_BRANA; BnaC03g67480D protein
STRINGBo3g173740.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.13e-99B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]