PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00068206001 | ||||||||
Common Name | GSBRNA2T00068206001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 192aa MW: 20828.1 Da PI: 7.4443 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.3 | 1.1e-19 | 5 | 53 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53 ++++GVr+++ +g+WvAeIr+p +r++lg+f taeeAa+a+++a+ + GSBRNA2T00068206001 5 KKFRGVRQRH-WGSWVAEIRHP-----LlkRRIWLGTFETAEEAARAYDEAAVLM 53 59*******9.**********8.....334*********************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.09E-33 | 5 | 64 | No hit | No description |
SuperFamily | SSF54171 | 2.62E-21 | 6 | 65 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.155 | 6 | 63 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.4E-41 | 6 | 69 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-12 | 6 | 50 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-33 | 6 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 29 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010143 | Biological Process | cutin biosynthetic process | ||||
GO:0010166 | Biological Process | wax metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MVQTKKFRGV RQRHWGSWVA EIRHPLLKRR IWLGTFETAE EAARAYDEAA VLMSGRNAKT 60 NFPVNNNNNN NTGDTSEGKT DISSSSSSSS SSSSSSLSSI LSAKLRKCCK SPSPSLTCLR 120 LDTASSHIGV WQKRAGSKSD SSWVMTVELG PASSSQEPTK NASQDDVGEE GVMDEEEKVA 180 LQMIEELLNT N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-17 | 5 | 64 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-17 | 3 | 67 | 2 | 67 | ATERF1 |
3gcc_A | 2e-17 | 3 | 67 | 2 | 67 | ATERF1 |
5wx9_A | 1e-16 | 6 | 67 | 14 | 76 | Ethylene-responsive transcription factor ERF096 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.25672 | 8e-68 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in sepals of very young closed buds. Later, expressed in sepals and petals veins and epidermis, as well as in developing gynoecium but not in stamens. At anthesis, confined to the gynoecium, commenced in the anther, and slightly expressed in the anther filament. When petals and sepals withered, strong expression at the bottom of the silique, in the abscission zone, and in the pedicel region below it. At silique maturity, detected in the same region but only at the nectaries. {ECO:0000269|PubMed:15319479}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in aerial organs, mostly in flowers, and in roots. Also observed at the branch points of pedicels of most young flowers, and in a patchy pattern in roots of mature plants and very young leaves in the rosette, including support cells of their trichomes. {ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00068206001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117941 | 1e-149 | AK117941.1 Arabidopsis thaliana At1g15360 mRNA for putative ethylene responsive element, complete cds, clone: RAFL19-13-G20. | |||
GenBank | AY378101 | 1e-149 | AY378101.1 Arabidopsis thaliana transcription factor wax inducer 1 (WIN1) mRNA, complete cds. | |||
GenBank | BT005220 | 1e-149 | BT005220.1 Arabidopsis thaliana At1g15360 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013584671.1 | 1e-109 | PREDICTED: ethylene-responsive transcription factor WIN1 | ||||
Refseq | XP_013673757.1 | 1e-109 | ethylene-responsive transcription factor WIN1-like | ||||
Swissprot | Q9XI33 | 1e-107 | WIN1_ARATH; Ethylene-responsive transcription factor WIN1 | ||||
TrEMBL | A0A078HP60 | 1e-137 | A0A078HP60_BRANA; BnaC05g11660D protein | ||||
STRING | AT1G15360.1 | 1e-105 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM834 | 28 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15360.1 | 5e-83 | ERF family protein |