PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00067972001
Common NameGSBRNA2T00067972001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 283aa    MW: 32171.2 Da    PI: 4.6403
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00067972001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.6e-1958111356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k++++  +q+++Le+ Fe ++++  e++++LA++lgL+ rqV vWFqNrRa++k
  GSBRNA2T00067972001  58 KKRRLRVDQVKALEKNFELENKLEPERKTKLAQELGLEPRQVAVWFQNRRARWK 111
                          45578899*********************************************9 PP
2HD-ZIP_I/II126.51.2e-4057148192
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrl  +qvk+LE++Fe e+kLeperK++la+eLgl+prqvavWFqnrRAR+ktkqlEkdy  Lk++yd+l+++ ++L++++++L  +
  GSBRNA2T00067972001  57 EKKRRLRVDQVKALEKNFELENKLEPERKTKLAQELGLEPRQVAVWFQNRRARWKTKQLEKDYGLLKSQYDSLRHNFDSLRRDNDSLVLK 146
                          69************************************************************************************9977 PP

          HD-ZIP_I/II  91 lk 92 
                          ++
  GSBRNA2T00067972001 147 IS 148
                          76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-1942115IPR009057Homeodomain-like
PROSITE profilePS5007117.26553113IPR001356Homeobox domain
SMARTSM003891.7E-1656117IPR001356Homeobox domain
CDDcd000869.54E-1658114No hitNo description
PfamPF000465.2E-1658111IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-1961120IPR009057Homeodomain-like
PRINTSPR000317.0E-68493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000317.0E-693109IPR000047Helix-turn-helix motif
PfamPF021834.5E-16113154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MKRLSSSDSM YGLISNSTDE QSFRGYGHNF QSMLDGYEDD STMMEEYSGN HHMGQSEKKR  60
RLRVDQVKAL EKNFELENKL EPERKTKLAQ ELGLEPRQVA VWFQNRRARW KTKQLEKDYG  120
LLKSQYDSLR HNFDSLRRDN DSLVLKISEL KAKINGEEDN NKVTAESDIS AVKEENVPSS  180
PPEFIEHSTG FEYRRSFTDL CDLLPNSTAP DGGSSDSCDS SAETSSENGR LTTPTVTGGN  240
LFQFVKTEQM EDHDDFLSGE EGCCFFSDEQ PPSLHWYSAS DH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105113RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.212020.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with a lower level in siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00067972001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623152.10.0PREDICTED: homeobox-leucine zipper protein ATHB-16-like
SwissprotQ940J11e-162ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A078HPH20.0A0A078HPH2_BRANA; BnaC03g60860D protein
TrEMBLA0A3P6B6420.0A0A3P6B642_BRAOL; Uncharacterized protein
STRINGBo3g152870.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-139homeobox protein 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]