PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00067839001
Common NameGSBRNA2T00067839001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 460aa    MW: 50818.5 Da    PI: 5.3362
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00067839001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_122.91.9e-07139201163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e+e +r rr   NRe+Ar   +R++a +eeL +k++ L  eN+ L+ e +   ke ++l++ +
  GSBRNA2T00067839001 139 EREERRIRRILANRESARQTIRRRQAMCEELSKKAADLAYENENLRREKDWALKEFQSLETIN 201
                          78899*******************************************999999999988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.9E-8139203IPR004827Basic-leucine zipper domain
PfamPF001703.6E-7139201IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.933141204IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.38E-6143198No hitNo description
Gene3DG3DSA:1.20.5.1702.9E-6143209No hitNo description
CDDcd147024.47E-12149195No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MELEPISSCC STSSSGEDAA ANMTELEAAE ALADLAQLAV MREQVFESAA SWGSKGKRVR  60
KRVKTESPPA DSETLPTPDL AEELAVKEEG AEPISREVTE VPVKTETNGE TPKPNLASTL  120
RCNRPSGCGR SRQNLSEAER EERRIRRILA NRESARQTIR RRQAMCEELS KKAADLAYEN  180
ENLRREKDWA LKEFQSLETI NKHLKEQVAK SVKPETKEPE ESPKPSQVEM STSSTTPFYF  240
YNQNPYQLFC WPHVTQPSNP MVSPLESQNG FTAPFTTSEG ASAKAMTTQE NGNPGGDDNG  300
QKTHFYVVPC PWFLPAPTDQ SNGVPFTFEE PQRVVSSNGH HTDDSSTKPV EVTKTLTSIK  360
EENSGSTETR PLYDLNESAA EVLSEEGDGF PVTTQQQAFS FKPEDVSDSP NGVTPPGHRV  420
LMSLQGKKQG SLAAAEARKR RKELTKLKNL HGRQCRMQV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1437442RKRRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00067839001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893560.0AC189356.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013697862.10.0uncharacterized protein BNAC05G15020D
TrEMBLA0A078HLP80.0A0A078HLP8_BRANA; BnaC05g15020D protein
STRINGBo5g027510.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112112428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.11e-176bZIP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]