PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00067671001 | ||||||||
Common Name | GSBRNA2T00067671001, LOC106432527, LOC106437077, LOC106437165 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 283aa MW: 31065.8 Da PI: 7.8134 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.7 | 8.2e-18 | 126 | 180 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Le+ F+ +++++ ++++ LA++l+L rqV vWFqNrRa+ k GSBRNA2T00067671001 126 RKKLRLTKQQSALLEDSFKVHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTK 180 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 122.5 | 2e-39 | 126 | 215 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k+q++lLE+sF+ +++L+p++K+ lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke ++L+ + GSBRNA2T00067671001 126 RKKLRLTKQQSALLEDSFKVHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLK-A 214 69*************************************************************************************9.5 PP HD-ZIP_I/II 91 l 91 l GSBRNA2T00067671001 215 L 215 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.1E-17 | 114 | 176 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.973 | 122 | 182 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.42E-18 | 124 | 190 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.6E-15 | 124 | 186 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.82E-15 | 126 | 183 | No hit | No description |
Pfam | PF00046 | 3.1E-15 | 126 | 180 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 157 | 180 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 2.5E-25 | 182 | 225 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 4.5E-10 | 182 | 216 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MGLDDSCNTG LVLGLGLSPT PNNYNHTIKK SFTTVEHHFD PSLTLSLSGE SYKTKAVEMT 60 DAGAGDQIFR QTSSHSGVSS FSSGRVKRER EVFSGDGEEE AEETTERVVS SRLSDDHEDE 120 EGASARKKLR LTKQQSALLE DSFKVHSTLN PKQKQVLARQ LNLRPRQVEV WFQNRRARTK 180 LKQTEVDCEF LKKCCETLTD ENRRLQKELQ DLKALKMSQP FYMHIPPATL TMCPSCERLS 240 GGGAGGGGGG TVAVDGETGK GAFSIVTKPR FYSHFTNPSA AC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 174 | 182 | RRARTKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.23528 | 1e-95 | flower| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00477 | DAP | Transfer from AT4G37790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00067671001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189183 | 0.0 | AC189183.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB001A20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009133094.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT22 | ||||
Refseq | XP_013728828.1 | 0.0 | homeobox-leucine zipper protein HAT22 | ||||
Refseq | XP_013733489.1 | 0.0 | homeobox-leucine zipper protein HAT22 | ||||
Refseq | XP_013733565.1 | 0.0 | homeobox-leucine zipper protein HAT22 | ||||
Swissprot | P46604 | 1e-156 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A078JM81 | 0.0 | A0A078JM81_BRANA; BnaA01g34550D protein | ||||
TrEMBL | A0A398AHE5 | 0.0 | A0A398AHE5_BRACM; Uncharacterized protein | ||||
TrEMBL | M4D5M9 | 0.0 | M4D5M9_BRARP; Uncharacterized protein | ||||
STRING | Bra011786.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1671 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 1e-152 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106432527 | 106437077 | 106437165 |
Publications ? help Back to Top | |||
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