PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00067162001 | ||||||||
Common Name | GSBRNA2T00067162001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 159aa MW: 17504.6 Da PI: 5.7962 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 37.8 | 4.1e-12 | 25 | 67 | 2 | 44 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 ++ ++ +rk++NRe+ArrsR RK++ ++ L+ v+ L +eN+ GSBRNA2T00067162001 25 SDERKRKRKESNRESARRSRMRKQKHLDDLTAQVAYLREENSH 67 5667899**********************************75 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.3E-12 | 23 | 76 | No hit | No description |
SMART | SM00338 | 3.9E-18 | 24 | 88 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.898 | 26 | 89 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.4E-9 | 28 | 68 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.88E-12 | 28 | 80 | No hit | No description |
CDD | cd14702 | 3.07E-22 | 29 | 79 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 31 | 46 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 159 aa Download sequence Send to blast |
MNKTEMGSPA SGNCSSGLQN YGSESDERKR KRKESNRESA RRSRMRKQKH LDDLTAQVAY 60 LREENSHIVA GIAVTTQQYV TIEAENSILR AQFLELNQRL DSLNEIVEIA GGFWMETGQG 120 GGVIGFYDGV MNPLNLGFYN QTLMGSASTV PADVFNCC* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 27 | 32 | RKRKRK |
2 | 27 | 33 | RKRKRKE |
3 | 27 | 48 | RKRKRKESNRESARRSRMRKQK |
4 | 40 | 47 | RRSRMRKQ |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269|PubMed:23461773}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00067162001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009128098.1 | 1e-102 | PREDICTED: bZIP transcription factor 44-like | ||||
Refseq | XP_013718541.1 | 1e-102 | bZIP transcription factor 44-like | ||||
Swissprot | C0Z2L5 | 4e-77 | BZP44_ARATH; bZIP transcription factor 44 | ||||
TrEMBL | A0A078HNT7 | 1e-115 | A0A078HNT7_BRANA; BnaA02g17180D protein | ||||
STRING | Bra008192.1-P | 1e-102 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM501 | 28 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75390.1 | 6e-58 | basic leucine-zipper 44 |
Publications ? help Back to Top | |||
---|---|---|---|
|