PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00066880001
Common NameGSBRNA2T00066880001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 159aa    MW: 18779.8 Da    PI: 10.7303
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00066880001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-1669114147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W + Ed +l+++v  +G++ W+ Iar+m+ gRt+k+c++rw++ 
  GSBRNA2T00066880001  69 RGHWKPSEDFKLKELVGVFGPKKWNHIARKMQ-GRTGKSCRLRWFNQ 114
                          899*****************************.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.18664119IPR017930Myb domain
SMARTSM007174.8E-1368117IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-1869153IPR009057Homeodomain-like
PfamPF002495.1E-1569114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2570133IPR009057Homeodomain-like
CDDcd001672.25E-1172113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MVYVHGFKEN NLKKTRMEFP KYPCDVSHCR VPFNGLGDNN ASSLRELCNK RKMMHQENKK  60
KQLSKVCTRG HWKPSEDFKL KELVGVFGPK KWNHIARKMQ GRTGKSCRLR WFNQLDPRII  120
KSAFSEEEEE KLLAVHRTFG NNQFLTQSQG RDRLLLQMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-164714136130MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-164714136130MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.151661e-145seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00066880001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139913.11e-102PREDICTED: transcription factor MYB35-like
TrEMBLA0A078JJX81e-115A0A078JJX8_BRANA; BnaAnng25220D protein (Fragment)
STRINGBra025652.1-P8e-58(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.11e-49myb domain protein 110
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]