PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00066735001 | ||||||||
Common Name | GSBRNA2T00066735001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 439aa MW: 47573.8 Da PI: 7.8753 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.1 | 1.1e-06 | 113 | 134 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + Crf+ G C++G++C+F H+ GSBRNA2T00066735001 113 KVCRFWVD-GSCSHGEKCRFLHC 134 68******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.324 | 28 | 54 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.018 | 28 | 53 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.249 | 109 | 136 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-6 | 110 | 133 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-4 | 111 | 135 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-4 | 112 | 134 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-5 | 113 | 133 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:2.130.10.10 | 9.8E-46 | 134 | 429 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 2.2E-6 | 140 | 179 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 3.94E-47 | 141 | 431 | IPR017986 | WD40-repeat-containing domain |
Pfam | PF00400 | 1.6E-5 | 143 | 179 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 14.418 | 147 | 188 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 21.067 | 147 | 396 | IPR017986 | WD40-repeat-containing domain |
PRINTS | PR00320 | 7.1E-7 | 166 | 180 | IPR020472 | G-protein beta WD-40 repeat |
PROSITE pattern | PS00678 | 0 | 166 | 180 | IPR019775 | WD40 repeat, conserved site |
SMART | SM00320 | 4.2 | 219 | 256 | IPR001680 | WD40 repeat |
SMART | SM00320 | 0.054 | 263 | 300 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 11.344 | 270 | 309 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 7.1E-7 | 287 | 301 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 1.9E-4 | 303 | 340 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0046 | 305 | 339 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 7.1E-7 | 327 | 341 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 5.8 | 344 | 387 | IPR001680 | WD40 repeat |
SMART | SM00320 | 3.4 | 390 | 427 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MDFDSNGGNK RVFNRLGGPT RPSPQQTNTR QQVCFHWRAG RCYRNPCQFL HRELPAGPVP 60 NHANKRAPDE SGFAGPSHRR GPGFNGSHSS NNNNNTWGRF GGNSRAVVTK TEKVCRFWVD 120 GSCSHGEKCR FLHCWSKGDG FSLLTQLDGH EKLVSGIALP SGSDKLYTGS KDGTIRVWDC 180 ASGQCTSVLN LGAEVGCVIT EGPWLLVGMP NLVKAWNMET NADQSLSGPV GQVYSLVVGS 240 DLLFAGTQDG SILAWRYNAA TNCFEPAASL MGHTLAVVTL YVGANRLYSG SMDKSIKVWS 300 LENLQCIQTL TDHTSVVMSL ICWDQFLLSC SLDNTVKIWA AVEGGNLEVT YTHKEENGVL 360 ALCGVHDAEA KPVLLCSCND NTLRLYDLPS FTERGKIFAK QEIRSIQIGP GGIFFTGDGT 420 GQVKVWKWST APAAAAMS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6g6m_A | 1e-20 | 126 | 437 | 5 | 323 | Tako8 |
6g6n_A | 1e-20 | 126 | 437 | 5 | 323 | Tako8 |
6g6n_B | 1e-20 | 126 | 437 | 5 | 323 | Tako8 |
6g6n_C | 1e-20 | 126 | 437 | 5 | 323 | Tako8 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.6867 | 0.0 | flower| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00066735001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232439 | 0.0 | AC232439.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB003D07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009132571.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 63-like | ||||
Swissprot | Q9FNZ1 | 0.0 | C3H63_ARATH; Zinc finger CCCH domain-containing protein 63 | ||||
TrEMBL | A0A078HQ31 | 0.0 | A0A078HQ31_BRANA; BnaA03g12910D protein | ||||
TrEMBL | A0A397ZUT9 | 0.0 | A0A397ZUT9_BRACM; Uncharacterized protein | ||||
STRING | Bra029149.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1839 | 28 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51980.1 | 0.0 | C3H family protein |
Publications ? help Back to Top | |||
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