PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00066453001 | ||||||||
Common Name | GSBRNA2T00066453001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 279aa MW: 32291.2 Da PI: 4.7468 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 21.8 | 2.4e-07 | 11 | 49 | 3 | 41 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 i + + r+ tf R++ + K +EL vLCd++ + +i+ GSBRNA2T00066453001 11 ITDGRAREATFNLRKEELKQKLYELHVLCDVDTCAVIYN 49 6777899***************************99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 13.82 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.5E-7 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.30E-19 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.96E-18 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.9E-10 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MGKKKMDLTY ITDGRAREAT FNLRKEELKQ KLYELHVLCD VDTCAVIYNQ YDPNPEVWPS 60 NSEVKSVLEK FEMLSEKEKT CRSVNHEEFL HQMIEKARTK RQKQNDQNKE KYMRELMFAF 120 LSGNMEDLSL NNDDRSELCS FIDQYLKELV QHKNQTLNNP NFEIGQSSSM ALDMNIAQTS 180 IAEAGSSSFL VFKTSRSSKL TKMLQSVIST YHSDLPLDNF VASVPSTSSN EEVYIPVMNQ 240 DESYNQNQNQ NLEQGFVEEM MKIGEQTGFP WMEDNNRF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00066453001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437602.1 | 1e-174 | PREDICTED: agamous-like MADS-box protein AGL80 isoform X1 | ||||
TrEMBL | A0A078HM65 | 0.0 | A0A078HM65_BRANA; BnaC01g28010D protein | ||||
STRING | Bo1g088030.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28700.1 | 4e-85 | AGAMOUS-like 46 |
Publications ? help Back to Top | |||
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