PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00066125001

Common Name

GSBRNA2T00066125001, LOC106434940

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 223aa MW: 24234.3 Da PI: 6.621

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00066125001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.3	6.2e-39	11	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC+++C++apyf ae+ +++fa+vhk+FGasn +kll +p ++r++a+++l yeA ar+rdPvyG+vg+i++lq+q+++ GSBRNA2T00066125001 11 PCGACKFLRRKCVAECIFAPYFDAEEgTAHFAAVHKVFGASNTSKLLLMIPANRRPEAVATLSYEALARLRDPVYGCVGHIFALQHQVMS 100 7*******************999879********************************************************** PP DUF260 90 lkaelallkee 100 l++ela++k++ GSBRNA2T00066125001 101 LQEELAVVKTH 111 ****99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.848	10	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.9E-38	11	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MSGSTPSGGS PCGACKFLRR KCVAECIFAP YFDAEEGTAH FAAVHKVFGA SNTSKLLLMI 60 PANRRPEAVA TLSYEALARL RDPVYGCVGH IFALQHQVMS LQEELAVVKT HLTTLERLPP 120 QPKQQNNSQT EAASSTKAPL IATADHKKNN VSSSLLHIYG MSQEQQQQQP QEGTEVPNES 180 VDFSTLLGLE DPLDRDGDLN TLAREFVSKY LTDGKYRSSS PI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-38	4	112	4	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-38	4	112	4	111	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00066125001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009111506.1	1e-166	PREDICTED: LOB domain-containing protein 31
Refseq	XP_013731248.1	1e-166	LOB domain-containing protein 31
Swissprot	O81322	1e-109	LBD31_ARATH; LOB domain-containing protein 31
TrEMBL	A0A078JPX1	1e-165	A0A078JPX1_BRANA; BnaUnng02520D protein
TrEMBL	A0A291LR22	1e-165	A0A291LR22_BRARR; Transcription factor LBD31
TrEMBL	A0A3P5XT75	1e-165	A0A3P5XT75_BRACM; Uncharacterized protein
TrEMBL	M4F8B0	1e-165	M4F8B0_BRARP; Uncharacterized protein
STRING	Bra037322.1-P	1e-165	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00210.1	1e-101	LOB domain-containing protein 31

Link Out ? help Back to Top
Entrez Gene	106434940

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]