PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00065767001

Common Name

GSBRNA2T00065767001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

FAR1

Protein Properties

Length: 174aa MW: 19704.5 Da PI: 9.7606

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00065767001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	42.9	1.6e-13	12	78	2	73
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekd 73 Y++Y+ + GF+vr++++ k+ n++ ++ +vCskeg r+e k k ++ r++tr+gCka++ ++ d GSBRNA2T00065767001 12 AYRKYGGNHGFDVRRQRTAKK--NNKLVRMVYVCSKEGLRQELKVK---KSYARPTTRCGCKARMSCYLQVD 78 59***********998887..7779**********98766...999***********9887755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.9E-10	12	77	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MDFSSDESAY KAYRKYGGNH GFDVRRQRTA KKNNKLVRMV YVCSKEGLRQ ELKVKKSYAR 60 PTTRCGCKAR MSCYLQVDKI IKLFIYSSEG IIQAQLLSAS LFIIFVSFVY SLLVSIFVLT 120 PMLLLHSSVS CGSRLFFFFL LCIFFSATLL CSLFSATLLC SLLGHFFLDP ICL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00065767001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013615310.1	1e-47	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like, partial
Refseq	XP_022552503.1	2e-46	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A078HL01	1e-120	A0A078HL01_BRANA; BnaA02g18540D protein
STRING	Bo02148s010.1	1e-46	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6200	6	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	8e-08	FAR1-related sequence 11

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]