PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00064137001 | ||||||||
Common Name | GSBRNA2T00064137001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 261aa MW: 29936.3 Da PI: 5.2149 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66 | 5.1e-21 | 66 | 119 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fek++++ e++++LAkklgL+ rqV+vWFqNrRa++k GSBRNA2T00064137001 66 KKRRLTHEQVHLLEKSFEKENKLEPERKTQLAKKLGLQPRQVSVWFQNRRARWK 119 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.6 | 2.6e-41 | 66 | 157 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrl++eqv+lLE+sFe+e+kLeperK++la++Lglqprqv vWFqnrRAR+ktkqlE+d++ Lk++yd+l ++ +++ k+++ Lr+++ GSBRNA2T00064137001 66 KKRRLTHEQVHLLEKSFEKENKLEPERKTQLAKKLGLQPRQVSVWFQNRRARWKTKQLERDFNLLKSSYDQLLSNYDSILKDNHLLRSQV 155 9**************************************************************************************999 PP HD-ZIP_I/II 92 ke 93 ++ GSBRNA2T00064137001 156 TS 157 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.99E-21 | 51 | 123 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.204 | 61 | 121 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.8E-20 | 64 | 125 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.2E-18 | 66 | 119 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.95E-19 | 66 | 122 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-22 | 68 | 127 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.7E-6 | 92 | 101 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 96 | 119 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.7E-6 | 101 | 117 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.2E-15 | 121 | 163 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MESNKFFFNP STSHGNMFFL GNLNPVVQGS MMNMEESSSK RRPFFCSPDD LLYDDVDYYD 60 DQTPDKKRRL THEQVHLLEK SFEKENKLEP ERKTQLAKKL GLQPRQVSVW FQNRRARWKT 120 KQLERDFNLL KSSYDQLLSN YDSILKDNHL LRSQVTSLAG KVQAKEETAP CQVPESNQLD 180 PVNLNRFEPA IKTEDRLSSG SAVLDEDAPH QLRDSCDSYF PTIVPIHHSA EEDNNGSGND 240 TGCFADVFVQ GESFGFWGWT * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 121 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.8351 | 0.0 | leaf| root| seed| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00064137001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009147435.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT5 | ||||
Swissprot | Q02283 | 1e-120 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A078HJS4 | 0.0 | A0A078HJS4_BRANA; BnaA05g33840D protein | ||||
TrEMBL | A0A397ZN19 | 0.0 | A0A397ZN19_BRACM; Uncharacterized protein | ||||
TrEMBL | M4FDE5 | 0.0 | M4FDE5_BRARP; Uncharacterized protein | ||||
STRING | Bra039116.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8884 | 27 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 1e-123 | homeobox 1 |
Publications ? help Back to Top | |||
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