PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00063057001 | ||||||||
Common Name | GSBRNA2T00063057001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 347aa MW: 39379 Da PI: 4.9751 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122 | 3.2e-38 | 38 | 138 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 aCaaCk++rr+Ca+dC+lapyfpaeqpk f+nvh+lFG++ ++k+l++l+e +r++am+s+++++ +r r+Pv+G++g+ ++lq + + GSBRNA2T00063057001 38 ACAACKYQRRRCAADCPLAPYFPAEQPKLFQNVHRLFGVRSIVKILENLDELQRPEAMKSIIFQSYVRDRNPVHGCLGITQQLQYMIWVA 127 7***************************************************************************************** PP DUF260 91 kaelallkeel 101 ++el++++++l GSBRNA2T00063057001 128 EEELKAVNSQL 138 *****999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.294 | 37 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.4E-35 | 38 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MSQIKTIHNP IGSLERFLDL LLISLIVYMT LKGGTSGACA ACKYQRRRCA ADCPLAPYFP 60 AEQPKLFQNV HRLFGVRSIV KILENLDELQ RPEAMKSIIF QSYVRDRNPV HGCLGITQQL 120 QYMIWVAEEE LKAVNSQLQL YRNGQNHPNP HNMMIHELGE KQDLTSQLDL GMGLPVNDNN 180 QGNNTIPFFS PVSETQQQPP HMSYCSDQVN NHDYNPTPDS CKEVVNNHNT SLAWGQNQFP 240 YNHHNYGFIN QNEHCSETKN NNSVMAIQSQ LVNLQMASNQ QEEEVDDQNY DEIHQFLEII 300 DESQSFTETK EVYASSSGES LKEPIDEVGE KELRRAATCF SLTSVN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-25 | 34 | 145 | 7 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-25 | 34 | 145 | 7 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.28232 | 0.0 | microspore |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00063057001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009149863.1 | 0.0 | PREDICTED: LOB domain-containing protein 27 | ||||
Refseq | XP_013706013.1 | 0.0 | LOB domain-containing protein 27-like | ||||
Swissprot | Q9STS6 | 1e-120 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | A0A078HJA3 | 0.0 | A0A078HJA3_BRANA; BnaA06g17030D protein | ||||
TrEMBL | A0A3P5YTK1 | 0.0 | A0A3P5YTK1_BRACM; Uncharacterized protein | ||||
STRING | Bo3g135950.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6303 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 1e-122 | LOB domain-containing protein 27 |
Publications ? help Back to Top | |||
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