PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00062620001
Common NameGSBRNA2T00062620001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 625aa    MW: 67418.4 Da    PI: 5.7719
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00062620001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.51e-31239296260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          +DgynWrKYGqK vkgse+prsYY+Ct ++C+vkkkvers+ +++++ei+Y+g Hnh+k
  GSBRNA2T00062620001 239 EDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSR-EGHITEIIYKGAHNHSK 296
                          8****************************************.***************85 PP
2WRKY102.91.7e-32433491159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+H+he
  GSBRNA2T00062620001 433 LDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHDHE 491
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-28236297IPR003657WRKY domain
SuperFamilySSF1182904.32E-25237297IPR003657WRKY domain
SMARTSM007741.6E-34238296IPR003657WRKY domain
PROSITE profilePS5081123.25239297IPR003657WRKY domain
PfamPF031065.2E-24239294IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-35418493IPR003657WRKY domain
SuperFamilySSF1182909.42E-28425493IPR003657WRKY domain
PROSITE profilePS5081137.046428493IPR003657WRKY domain
SMARTSM007741.7E-36433492IPR003657WRKY domain
PfamPF031063.0E-24434490IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MSGFEETVAV MGEWVPCNPS SKRVLERELS LNHGQVTSNN NKDSSQTNNI SGGGLRERIA  60
ARAGFNTPRL NTENIRSNTD SSSPCLTISS PGLSPATLLE SPVFLSNPLA QPSPTTGKFP  120
FLPGANSNGL SSSAASDKEK DEFFDGIGAS FTFHPVSTSS SSFFQGATEM TPLDYGNYNN  180
SPSHQSPEED VKLGSEQSGL KRKSSDATII TNDHQEVEEG EGEEQRGGDS MVGGGAPAED  240
GYNWRKYGQK LVKGSEYPRS YYKCTNPNCQ VKKKVERSRE GHITEIIYKG AHNHSKPPPN  300
RRSGMQLDGT EQAEQQQQQQ QRDNTQQQVG SNENNVEEGN QSAQTGGQYE SGDVIVVDAS  360
STFSNDEDED DRGTHGSASL GYDGGGGDGE GGEDESESKR RKLEAYAIEM SGATRAIREP  420
RVVVQTTSGV DILDDGYRWR KYGQKVVKGN PNPRSYYKCT APGCTVRKHV ERASHDLKSV  480
ITTYEGKHDH EVPAARNSSH GGGGGNGNSG VSAAQTNHYS EPPRGRYDRQ LNQSQFGRPF  540
SFQPHLGPPS GFAFGLGQTG LGNFSIPGLA FGQGKLPSLP YQYLSQPGGM SEAMMQRGME  600
PKVEPGSETG QSVYNQIMSR LPQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-35239494878Probable WRKY transcription factor 4
2lex_A2e-35239494878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.199730.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00062620001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411940.0AC241194.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH124P11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022569866.10.0probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A078HIW90.0A0A078HIW9_BRANA; BnaA03g10980D protein
STRINGBo3g021100.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79542740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  5. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]