PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00062614001
Common NameGSBRNA2T00062614001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 348aa    MW: 38053.6 Da    PI: 5.9145
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00062614001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55.1e-0587107323
                          ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                          C+ C+k F+++  L  H+r H
  GSBRNA2T00062614001  87 CSVCHKKFTSRKALYGHMRFH 107
                          *******************99 PP
2zf-C2H211.50.00092232254123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C  C+ksF++   L  H  +H
  GSBRNA2T00062614001 232 HVCVTCNKSFTSYQALGGHRASH 254
                          79**********99999998887 PP
3zf-C2H214.88.2e-05282304123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C +C+ksF++   L  H r+H
  GSBRNA2T00062614001 282 HVCDICHKSFPTGQALGGHKRRH 304
                          79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.4E-64772IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.84E-948107No hitNo description
PfamPF139127.9E-95072IPR007087Zinc finger, C2H2
SMARTSM003550.15072IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.9265077IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.01485107IPR007087Zinc finger, C2H2
SMARTSM003550.02385107IPR015880Zinc finger, C2H2-like
PfamPF139122.2E-487108IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SuperFamilySSF576676.15E-7231304No hitNo description
PfamPF139123.2E-10232256IPR007087Zinc finger, C2H2
SMARTSM003550.37232254IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.827232259IPR007087Zinc finger, C2H2
PROSITE patternPS000280234254IPR007087Zinc finger, C2H2
PfamPF139123.3E-13282305IPR007087Zinc finger, C2H2
SMARTSM003550.043282304IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.12282304IPR007087Zinc finger, C2H2
PROSITE patternPS000280284304IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEQCYKDDCG SSLGFIVEKR KDIEKDQAED DEKEPKSISL REEEEEEKKH MCSECGKQFM  60
SGKALGGHKR IHVLENQNKS GESEIDCSVC HKKFTSRKAL YGHMRFHPDR AWKGVLPPPP  120
PHPLGNSSSS TLSIDDHHVG EFTSSDHDDD DDDGYDNIDA KDLMLLATTA EAVNLDVAET  180
SDSHSAEDMK KKKRRLSEIE KVSSSSSTHD HHHQLGDVAA AAEEGGGARE KHVCVTCNKS  240
FTSYQALGGH RASHNKAKIL ENHQARANTS NTSLSSSNNG DHVCDICHKS FPTGQALGGH  300
KRRHWTGPVS SEAATAPAAG SSSQGTEAVQ EVNKFEFDLN ELPPNEE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189194KKKKRR
2190194KKKRR
3190195KKKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00062614001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411940.0AC241194.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH124P11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013679216.10.0zinc finger protein ZAT1-like
TrEMBLA0A078HG390.0A0A078HG39_BRANA; BnaA03g11040D protein
STRINGBo3g021160.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.14e-45C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]