PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00061686001
Common NameGSBRNA2T00061686001, LOC106377099
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 366aa    MW: 41189.5 Da    PI: 6.6682
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00061686001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.4e-07326226
                         -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                         k+ lC+ffa  G C  Gd+C F+H+
  GSBRNA2T00061686001  3 KRILCKFFAH-GACLKGDNCEFSHD 26
                         889***6666.*************5 PP
2zf-CCCH23.87.6e-083454526
                         --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                          C f++r G C+yG+rC++ H+
  GSBRNA2T00061686001 34 VCTFYQR-GLCSYGSRCRYEHV 54
                         5999999.***********997 PP
3zf-CCCH22.52e-07106129226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C+ +a+ G C++Gd+C+ +Hg
  GSBRNA2T00061686001 106 DQPICS-YAAAGDCPRGDQCPHIHG 129
                          578999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.187128IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-7326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3992956IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-53153IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-43155IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-53454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.535104131IPR000571Zinc finger, CCCH-type
SMARTSM003560.0017105130IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4106129IPR000571Zinc finger, CCCH-type
SuperFamilySSF578505.01E-13163237No hitNo description
Gene3DG3DSA:3.30.40.101.5E-9166232IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001624.31E-4172232No hitNo description
PfamPF000977.4E-7173230IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001845.3E-7173230IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.238173231IPR001841Zinc finger, RING-type
PROSITE patternPS005180197206IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.197260289IPR000571Zinc finger, CCCH-type
SMARTSM003560.16260288IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSKRILCKFF AHGACLKGDN CEFSHDWKDP TNNVCTFYQR GLCSYGSRCR YEHVKLKPHP  60
SPASSSSALP RSSASEKDLS PLPSSPAWTS DSSDNTFSSS TSKPQDQPIC SYAAAGDCPR  120
GDQCPHIHGD LCPTCGKRCL HPFRPEEREE HKKACEKKHK QLEALKLSQE VECCVCLERV  180
LSKPTPAERK FGLLTECDHA FCIGCIRNWR SSSPSTGMDV NSTLRACPIC RKLSYFVVPS  240
VIWFSAPEEK KEIMDNYRDK LRSIDCKHFN FGDGNCPFGT SCFYKHTVKP GSYAWKYHRP  300
PPRRPSPSGS NLSDMDTFFN MMGSIMSEGE YDPFGFEDSD DDELTTTDMM MLLLNLDMES  360
DEDIY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00061686001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892711e-178AC189271.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023L08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013672722.10.0putative RING-type E3 ubiquitin transferase C3H69
SwissprotE0X9N41e-173C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A078FHG60.0A0A078FHG6_BRANA; BnaC08g09210D protein
STRINGBo8g032490.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-132C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]