PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00060487001 | ||||||||
Common Name | GSBRNA2T00060487001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 150aa MW: 17079.5 Da PI: 8.4873 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 37.9 | 4e-12 | 51 | 95 | 5 | 49 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 ++ +r ++NRe+A+rsR+RKk + e L+e+v L+++N++L ++l GSBRNA2T00060487001 51 RKRKRTMSNRESAKRSRLRKKRRFEDLTEEVNRLKSKNQELVNQL 95 577999*********************************998665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.2E-11 | 47 | 118 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.3E-10 | 48 | 97 | No hit | No description |
PROSITE profile | PS50217 | 10.783 | 49 | 98 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 7.4E-9 | 49 | 97 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.2E-9 | 51 | 98 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 54 | 69 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MSSTSLEPVH ICFDDATITG DEITEILAFL QSDTSDNPSG SNELEAPVDE RKRKRTMSNR 60 ESAKRSRLRK KRRFEDLTEE VNRLKSKNQE LVNQLANVLS CGNAISKENN RLKTESVCLE 120 IRLLELYRFL VAMQSPISTR LNYISKLMI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 52 | 72 | RKRTMSNRESAKRSRLRKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00060487001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022547447.1 | 1e-104 | basic leucine zipper 4 | ||||
Swissprot | Q9LQ65 | 1e-70 | BZIP4_ARATH; Basic leucine zipper 4 | ||||
TrEMBL | A0A078JKB8 | 1e-103 | A0A078JKB8_BRANA; BnaAnng23880D protein | ||||
TrEMBL | A0A397XUE6 | 1e-103 | A0A397XUE6_BRACM; Uncharacterized protein | ||||
STRING | Bra027855.1-P | 1e-103 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12232 | 24 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59530.1 | 1e-72 | basic leucine-zipper 4 |
Publications ? help Back to Top | |||
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