PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00060303001 | ||||||||
Common Name | GSBRNA2T00060303001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 29412 Da PI: 8.2289 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.7 | 1.2e-07 | 26 | 73 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 r WT+eE + + +a + + + +W +Ia++++ g+t ++ + k GSBRNA2T00060303001 26 RSVWTKEENKMFERALAIYAEDspdRWFSIASMIP-GKTVFDVMKQYSK 73 678*****************99*************.***9999888876 PP | |||||||
2 | Myb_DNA-binding | 39.9 | 9.6e-13 | 124 | 168 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++G+g+W+ I+r + +t+ q+ s+ qky GSBRNA2T00060303001 124 PWTEEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKY 168 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.222 | 24 | 77 | IPR017884 | SANT domain |
SMART | SM00717 | 1.8E-8 | 25 | 77 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-4 | 25 | 73 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.5E-6 | 26 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.04E-11 | 27 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.16E-7 | 29 | 74 | No hit | No description |
PROSITE profile | PS51294 | 19.439 | 117 | 173 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.35E-15 | 119 | 172 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-17 | 120 | 172 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 6.2E-11 | 121 | 173 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-10 | 121 | 171 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.55E-9 | 124 | 168 | No hit | No description |
Pfam | PF00249 | 4.1E-10 | 124 | 168 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
METLHPLSHV PISDNRFVVQ EMISSRSVWT KEENKMFERA LAIYAEDSPD RWFSIASMIP 60 GKTVFDVMKQ YSKLEEDVSD IEAGRVPIPG YPSASSPLGF DQDTCRKRPS WGRGSDHDRK 120 KGVPWTEEEH RRFLLGLLKY GKGDWRNISR NFVVSKTPTQ VASHAQKYYQ RQLSGAKDKR 180 RPSIHDITTV NLLNANLNRS FSDHRNILPD LGFVDKDDAE EGLMFISPNL YSGSRFSPSS 240 FPFDDAICFA GANAFSARS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-17 | 29 | 106 | 11 | 88 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.27681 | 0.0 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00347 | DAP | Transfer from AT3G11280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00060303001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013647448.1 | 0.0 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 2e-73 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A078HEX6 | 0.0 | A0A078HEX6_BRANA; BnaA01g30920D protein | ||||
TrEMBL | A0A3P5ZHP7 | 0.0 | A0A3P5ZHP7_BRACM; Uncharacterized protein | ||||
STRING | Bra034173.1-P | 1e-177 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4340 | 26 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11280.2 | 1e-159 | MYB family protein |
Publications ? help Back to Top | |||
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