PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00059736001
Common NameGSBRNA2T00059736001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 138aa    MW: 15757.4 Da    PI: 10.3406
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00059736001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.91.7e-1569103135
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE CS
               SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaev 35 
                          k+ien   rqvtfskRrn ++KKA+ELS LC++ +
  GSBRNA2T00059736001  69 KKIENVNSRQVTFSKRRNRLIKKANELSFLCEVTI 103
                          68******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-1761111IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.6761104IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.67E-1861104IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-146383IPR002100Transcription factor, MADS-box
PfamPF003191.1E-1470103IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-148398IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MKKTQNLTAT PNTTVLLPYA NNHQQWFQLF DSSIHYSVSL SPSLCFPPVF YFVEPKLLEK  60
MGRGKIEIKK IENVNSRQVT FSKRRNRLIK KANELSFLCE VTISPAEVLS TIDRVDGEVF  120
VLGFVFKGSP FVSLKRW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.271417e-40seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00059736001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A078JK712e-96A0A078JK71_BRANA; BnaUnng02030D protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.11e-18AGAMOUS-like 18
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]