PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00059232001
Common NameGSBRNA2T00059232001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 172aa    MW: 19891.1 Da    PI: 6.6828
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00059232001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.16.2e-1679137563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          +++rr+++NRe+ArrsR RK+  ++eL   v  +  eN++L ++l++l++  +k+ +e+
  GSBRNA2T00059232001  79 RKQRRMISNRESARRSRMRKQRHLDELWSQVMWFRVENHQLLDKLNNLSESHEKVLQEN 137
                          689***************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.1E-1475139IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.5377140IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.8E-1177133No hitNo description
SuperFamilySSF579596.26E-1379129No hitNo description
PfamPF001704.3E-1479137IPR004827Basic-leucine zipper domain
CDDcd147022.34E-1880130No hitNo description
PROSITE patternPS0003608297IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MQPQADVFSL HNYINSSNPS PYPSHFAVSP PYPINGQNLN PFYGIQSATN NPQSMSLSSN  60
STSDEAEEQQ TDKNIINERK QRRMISNRES ARRSRMRKQR HLDELWSQVM WFRVENHQLL  120
DKLNNLSESH EKVLQENVQL KGETSELKQV ISDMKIQSPF SCFRDDIIPI E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19198RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00059232001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168781e-161AB016878.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MQP15.
GenBankCP0026861e-161CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619546.11e-124PREDICTED: basic leucine zipper 43-like
SwissprotQ9FMC21e-63BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A078HBJ01e-123A0A078HBJ0_BRANA; BnaC02g38190D protein
TrEMBLA0A0D3AWQ91e-123A0A0D3AWQ9_BRAOL; Uncharacterized protein
STRINGBo2g149490.11e-123(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.11e-92basic leucine-zipper 42
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]