PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00058893001
Common NameGSBRNA2T00058893001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 346aa    MW: 39180.1 Da    PI: 8.0064
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00058893001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.21.3e-103986154
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                         ++ykGV    ++g W A+I+       +kr++lg+f +a eAa+a++ a  kl+
  GSBRNA2T00058893001 39 TKYKGVV-EQQNGHWGAQIYAD-----HKRIWLGTFKSAAEAAAAYDSASIKLR 86
                         69****6.8889******9993.....4*********************99997 PP
2B392.92.3e-29171272189
                          EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                          f k+ltpsdv+k++rlv+pkk+a +h             g   +e+++++++d+  r+W+++++y+k+s+++v+t+GW++Fvk+++Lke+
  GSBRNA2T00058893001 171 FHKELTPSDVGKLNRLVIPKKHAVKHlpfisddqnegetG-GAAEDVEVVFYDRAMRQWKFRYCYWKSSQSFVFTRGWNGFVKEKNLKEK 259
                          89*****************************998877743.34599******************************************** PP

                          -EEEEEE-SS.SE CS
                   B3  78 DfvvFkldgr.se 89 
                          D++vF+  +  s+
  GSBRNA2T00058893001 260 DVIVFYTCDVpSN 272
                          ******6554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.79E-113999No hitNo description
SuperFamilySSF541711.31E-134099IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.3E-164097IPR001471AP2/ERF domain
PROSITE profilePS5103217.1614097IPR001471AP2/ERF domain
SMARTSM003807.3E-1540103IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.3E-32166266IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-28169267IPR015300DNA-binding pseudobarrel domain
CDDcd100176.91E-26170274No hitNo description
SMARTSM010191.3E-21171279IPR003340B3 DNA binding domain
PfamPF023621.0E-26171273IPR003340B3 DNA binding domain
PROSITE profilePS5086312.224171281IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDSLKETSHE ANTTTDTSVS SDLRLAKRMK PTVSPTATTK YKGVVEQQNG HWGAQIYADH  60
KRIWLGTFKS AAEAAAAYDS ASIKLRSFDA NSHRNFPWSE ITVHEPDFQK SHTTEAVLNM  120
IRDSSYSQKF GDYLIVRSQM VAIANVNIVG SKQSRGGGEE STKCFSCTEL FHKELTPSDV  180
GKLNRLVIPK KHAVKHLPFI SDDQNEGETG GAAEDVEVVF YDRAMRQWKF RYCYWKSSQS  240
FVFTRGWNGF VKEKNLKEKD VIVFYTCDVP SNFKTLEGQS NKFLMIDVDY FTDKASVEPK  300
EVNKMVHNVS EREMKTENFF GTKVEEETKS EVSKGGFMLF GVRIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-2617026413100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00058893001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013725276.20.0AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6880.0RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A078HB030.0A0A078HB03_BRANA; BnaC05g27060D protein
STRINGBo5g081270.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-174RAV family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]