PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00058878001

Common Name

GSBRNA2T00058878001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 340aa MW: 38625.6 Da PI: 6.8658

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00058878001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.8e-05	171	190	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ GSBRNA2T00058878001 171 FSCPLCFKTFNRYNNMQMHM 190 89*****************9 PP
2	zf-C2H2	13.1	0.00029	255	277	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk F k + ++H +++ GSBRNA2T00058878001 255 FACRRCGKAFAVKGDWRTHEKNC 277 78*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.66	171	198	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.8E-5	171	190	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	173	193	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.87E-6	233	275	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.1E-5	241	275	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.767	255	275	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MSNPACSNLF NNGFDNTNFN YSTPLSYIYN SQNSFYHPDT TNPNYMSPTT TTSTFPNSPP 60 LREALPLLSL SPIRHQEQQD QTYFLNTNHT SSSNFHDVTV DLHLGLPNYR AGGSYIAPEA 120 TTEEQDQDHD QEVEVTLSHL HDDDDHHGDL YRGHNYWIPT PAQILIGPTQ FSCPLCFKTF 180 NRYNNMQMHM WGHGSQYRKG PESLRGTQPT GMLRLPCFCC APGCKNNIDH PRGKPLKDFR 240 TLQTHYKRKH GSRPFACRRC GKAFAVKGDW RTHEKNCGKL WYCSCGSDFK HKRSLKDHVK 300 AFGNGHVPCG IDSFGGDHED YYEAASDIEQ QDDCNNNEC*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00058878001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ311810	0.0	AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022558243.1	0.0	zinc finger protein WIP5-like
Swissprot	Q8W031	0.0	ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBL	A0A078HAZ5	0.0	A0A078HAZ5_BRANA; BnaC05g27160D protein
TrEMBL	A0A3P6EIT8	0.0	A0A3P6EIT8_BRAOL; Uncharacterized protein (Fragment)
STRING	Bra030450.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51220.1	1e-177	WIP domain protein 5

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]