PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00058691001
Common NameGSBRNA2T00058691001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 392aa    MW: 44138.1 Da    PI: 5.0226
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00058691001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.85.9e-132158542
                         SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
               SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                         n+   + tf kR++g+lKKA+ELS+L +++v+ +i s 
  GSBRNA2T00058691001 21 NSAAMNQTFRKRKKGLLKKANELSTLYGVKVCAVINSC 58
                         6666677**************************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.526957IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-9969IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-61131IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-1712104IPR002100Transcription factor, MADS-box
PfamPF003196.6E-142059IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-63146IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MIQKKVIRSA YGRIKIEPMT NSAAMNQTFR KRKKGLLKKA NELSTLYGVK VCAVINSCDS  60
TEPPEFWPSK EGAEAVHSAF MGVLPEERCK RMYDQERHLE ERIQKGQDRV MRLHTENREI  120
ELTEVMFDLL KGKTLMPDQY GDPSFMRDLN LFIGDYVKNL SHRIEFLEAN GEPVPPNVAA  180
TDASGPVVGD ANPFVVETEG LVSNPTEAYD HMRQYDGMDM SVNEQALGGF NDHVHHQNMN  240
HQEPFQYQTP TNFYDQTQPM FYGSSQGMDM NHQEPFQYQG PANFDDQTQP MFYGSSQDKY  300
TGLNHDQGQS SNQYPNSNQS FMSLLMGQPQ QMSDGQDTAT VASMDDKNNG YHQLPITSQM  360
PLTTTTTTAA AAADLSGHRI NNGWPTRFGL D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12933RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00058691001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013674471.20.0MADS-box transcription factor PHERES 1-like
TrEMBLA0A078JHF80.0A0A078JHF8_BRANA; BnaCnng53290D protein
STRINGBra020550.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14795620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.12e-41AGAMOUS-like 36
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]