PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00058631001
Common NameGSBRNA2T00058631001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 334aa    MW: 37089.3 Da    PI: 7.2237
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00058631001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.44.1e-18232265134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C +C +tkTp+WR gp g+ktLCnaCG++y++ +
  GSBRNA2T00058631001 232 CMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGR 265
                          99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.1E-931322IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.78226262IPR000679Zinc finger, GATA-type
SMARTSM004018.0E-16226276IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-14230263IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.19E-14230289No hitNo description
CDDcd002023.93E-14231278No hitNo description
PROSITE patternPS003440232257IPR000679Zinc finger, GATA-type
PfamPF003204.3E-16232265IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MFGQSFAEDL DCGNFFDNMD DLLDFPGGDI DVGFGIGDSD SFPNIWTTHQ DTWPAASDPL  60
FASNTNSDSS PELYVPFEDI VKVERPKCFV EESLVEKKED SFFTNTDSSS SHSQFRSSSP  120
VSVLESSSSS SHTTNTTSLV LPGKHGRPRT KRPRPQVQEK DKVNDNVFGA DSRLIIRIPK  180
QFLSDHSKMI TKKKKKKAKV VSSSSWSEID LETNGNNNVD SCSSEQNPVR KCMHCEVTKT  240
PQWRLGPMGP KTLCNACGVR YKSGRLFPEY RPAASPTFTP ALHSNSHKKV AEMRNKRCSN  300
GSYTNEENDL HDLVLNNAYI GIGVGKSQRV EKF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150154KRPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00058631001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534610.0AK353461.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-37-G07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022573680.10.0GATA transcription factor 8
SwissprotQ9SV301e-168GATA8_ARATH; GATA transcription factor 8
TrEMBLA0A078JNQ40.0A0A078JNQ4_BRANA; GATA transcription factor
TrEMBLA0A397ZQ740.0A0A397ZQ74_BRACM; GATA transcription factor
STRINGBo4g118340.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-123GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]